Gene information

Detail information of AfisC1G02314

Location

Gene	Chr	Start	End	Strand
AfisC1G02314	chr1	407353225	407354126	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	GEU31575.1	7.0e-30	zinc finger protein ZAT10-like
Swissprot	O22533.1	7.7e-26	COLD INDUCED ZINC FINGER PROTEIN 2
trEMBL	A0A6L2J6G8	5.0e-30	Zinc finger protein ZAT10-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G67450.1	44.66	3e-29	125	AZF1;ZF1	zinc-finger protein 1

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G02314	AT5G67450.1	206	85	6	10	188	34	237	44.66	3e-29	125
AfisC1G02314	AT5G04340.1	226	96	10	10	220	29	235	42.48	6e-29	124
AfisC1G02314	AT1G27730.1	224	84	13	10	221	32	223	42.86	9e-29	123

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13912.3	zf-C2H2_6	Domain	59	83	46.5	2.1e-12
PF13912.3	zf-C2H2_6	Domain	119	144	35.6	5.5e-09

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001047	F	core promoter binding
GO:0003006	P	developmental process involved in reproduction
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006979	P	response to oxidative stress
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009611	P	response to wounding
GO:0009644	P	response to high light intensity
GO:0009737	P	response to abscisic acid
GO:0010117	P	photoprotection
GO:0010200	P	response to chitin
GO:0015979	P	photosynthesis
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0035264	P	multicellular organism growth
GO:0042538	P	hyperosmotic salinity response
GO:0043565	F	sequence-specific DNA binding
GO:0044702	P	single organism reproductive process
GO:0055062	P	phosphate ion homeostasis
GO:0071289	P	cellular response to nickel ion
GO:2000280	P	regulation of root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network