Detail information of AfisC1G02333
| Gene | Chr | Start | End | Strand |
|---|
| AfisC1G02333 | chr1 | 411764242 | 411792923 | - |
| Database | accession number | e-value | annotation |
|---|
| nr | XP_020258777.1 | 6.1e-83 | upstream activation factor subunit spp27-like |
| Swissprot | Q05024.1 | 6.9e-15 | Protein TRI1 |
| trEMBL | A0A835QCK4 | 4.5e-80 | Upstream activation factor subunit spp27-like |
| TAIR id | % identity | e-value | bit
score | gene aliases | Short description |
|---|
| AT1G49520.1 | 43.97 | 1e-70 | 263 | | SWIB complex BAF60b domain-containing protein |
>>>Show top 3 blast result 
| Query id | Subject id | alignment
length | mis
matches | gap openings | query
start | query
end | subject
start | subject
end | % identity | e-value | bit
score |
|---|
| AfisC1G02333 | AT1G49520.1 | 348 | 137 | 7 | 1 | 313 | 1 | 325 | 43.97 | 1e-70 | 263 |
| AfisC1G02333 | AT1G49520.1 | 122 | 48 | 2 | 106 | 225 | 240 | 358 | 56.56 | 5e-32 | 135 |
| AfisC1G02333 | AT3G19080.1 | 341 | 167 | 4 | 1 | 313 | 1 | 338 | 41.94 | 1e-64 | 243 |
| Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
|---|
| PF08766.8 | DEK_C | Domain | 2 | 55 | 63.2 | 1.4e-17 |
| PF02201.15 | SWIB | Domain | 119 | 191 | 106.6 | 3.8e-31 |
| PF02201.15 | SWIB | Domain | 240 | 313 | 91.9 | 1.5e-26 |
| Accession | Ontology | Name |
|---|
| GO:0000500 | C | RNA polymerase I upstream activating factor complex
|
| GO:0001165 | F | RNA polymerase I upstream control element sequence-specific DNA binding
|
| GO:0001168 | F | transcription factor activity, RNA polymerase I upstream control element sequence-specific binding
|
| GO:0005737 | C | cytoplasm
|
| GO:0006325 | P | chromatin organization
|
| GO:0006355 | P | regulation of transcription, DNA-templated
|
| GO:0042790 | P | transcription of nuclear large rRNA transcript from RNA polymerase I promoter
|
| KO | Name | Enzyme ID | Pathway | Pathway ID |
|---|
| K15223 | UAF30, SPP27; upstream activation factor subunit UAF30 | EC:- | - | - |