result

Gene information

Detail information of AfisC1G02339

Location

Gene	Chr	Start	End	Strand
AfisC1G02339	chr1	412679914	412681654	-

Sequences

CDS

Protein

Gene

>AfisC1G02339
ATGCAGATTCGTGGGTCCTTAGAGAACTATTGGATTATCTCTGATTCTCTCAACGGTATGCATATAGTTAAATTTATATTTGATTTTCTTGTTCTAGTTGTGGCGGTGCATAAGTTATGGTAATTAAATATGCATAAAAACATGTATCTGTTAGGAAATTGATTGAACGGATTCATGTTACATACTATATGTTGACGCATTGAATTCTATCCATCGCCCTAATTTACAAATAAACTTAAATGCAAATCGTAAAAATAAAAACAGTAATCTTTATAAATATCTGAACATGTCACACGAGGGAGGAGCATTGAAGTATTTTGATGTTCAATGCAGCACAATTACACTAACAAAACTGAAAAATAATATCTTTAATCTAATGGTTTCACGTAATTTGGTTAACCCTGCATTGTTAGAGCAGAAGTGATCCAAGAGATTCATAACTCAGTTATAATAATCGATTAATATTAATCATCTGTCAAACTACAAATAGTATATGCAGTTATATTATATATTTATACTCTATAAATAGCATGCCAACTGTGCTTTATTTGCTGCTTAAATTATTTATGATTTGTCAGATTTCTTTTATGACATTTGTCTTGGATAAGGCTGTTATCATTTAGAATGTCCATTCTCATCTTGGTTCATGTCTGTCCATGCCAACTGATGAGGCTAACATTTATTTAGCTCATAATTCACATGGTGTTCATTTCTTCAATGCAAATGCTCAAGAAGTATCACATTGTTTACTTGGTGCGGTTCTTTCTTTACTTTGCTAAAGTCTGCAGTGAACAGAGGTAGATGCAGTTGGTTAAGTGGGTTGCTTCTAGATGGGTACACTTTCTCGATATTTAAGTTGCTGATTTGGATGATGGCATAGTCAAGTAAACTTTTCATTTATCTTCGTTCATCACAAAATATTAATAGTTGTGGTCATAACATATATGTTATCATGGTACATAAAATGGATGCATTCCCAATGGTCAAGATCATAATGGCTTTGTCAATGACACCATCTTCATAGTTGCTGAGTATGTTTCTAATGGAAATTTAAGGAGCCATCTTACTGGTATTGTGTTCAAAAATATCAGATTAAATGCTCTATTAGTAGTTTAATACACTCTGGTGCTAGATACTCATGTGTGTGTGTATAATTTCAGATTGGAGGAAGAGAGAGATGCTGAAATGGCCACAGAGAGTATCGGCAGTCATAGGAGTTGCAAGAGGACTACAATTTTTACATACAGTTACAGTTCCAGGCATTTTTGGTAATGATCTTCGAATTGAGAATATATTGGTTGATCAAACTCTTACAGCCAAAATCAGCAACTACAATCTACCGGTACTACTGAACAACAAGAACAAGAAGGTAAGCACAACACTTAGATTCAAGATTTTCAACCCATTTGAAAGTATATTCAAAACTTGAATGTTTTCAGGCTGGTTCAGAAAGCCCATTTGGAAAACTAGACAACAATGACAATGGAAGGTAAATTCTTTTCCACACTTCCAAAACAATCATTTGTTCAATAATTAGCAGTATAATAAGGTATCAGTGTTTCATTTTTTTAGTTATCCAAATATGGAAAATGGCGAAAAGGACGATGTGTATCAGCTTGGCCTCATTCTACTAGAAGTAATTACAGGCAAGCCAAATGGATCAAAAGATCAACTGGAAGCATTAAAAACCAAGGTATTTAATAAGAATATGCATCACGGTACATATATATATCATCTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK80907.1	3.5e-47	uncharacterized protein A4U43_C01F23090
Swissprot	Q9M9S4.1	2.2e-30	Probable LRR receptor-like serine/threonine-protein kinase At1g14390
trEMBL	A0A5P1FU03	2.5e-47	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G14390.1	47.95	5e-31	130		Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G02339	AT1G14390.1	146	68	3	5	148	531	670	47.95	5e-31	130
AfisC1G02339	AT2G02780.1	119	46	2	13	131	538	644	51.26	2e-28	121
AfisC1G02339	AT3G03770.2	133	66	3	17	146	569	692	41.35	1e-23	105

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	17	133	34.3	1.3e-08

Gene Ontology

Accession	Ontology	Name
GO:0000166	F	nucleotide binding
GO:0005515	F	protein binding
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0004672	F	protein kinase activity
GO:0007165	P	signal transduction
GO:0006468	P	protein phosphorylation
GO:0009416	P	response to light stimulus
GO:0009555	P	pollen development
GO:0009741	P	response to brassinosteroid
GO:0009793	P	embryo development ending in seed dormancy
GO:0016043	P	cellular component organization
GO:0030154	P	cell differentiation
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044444	C	cytoplasmic part
GO:0048236	P	plant-type spore development
GO:0048658	P	anther wall tapetum development
GO:0090558	P	plant epidermis development
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network