result

Gene information

Detail information of AfisC1G02439

Location

Gene	Chr	Start	End	Strand
AfisC1G02439	chr1	441649187	441652705	-

Sequences

CDS

Protein

Gene

>AfisC1G02439
CTTCAAACAAGTTCTTCATACCACACCTTAAAGCAACATAGTAGCAATATTAGAATTTGTGTATCCTGAAGTGGGAAAGCTATTATCTTTTACTGAAAAATTTTAGGTGATGGTGGCAGAGGAGGAAATGGAAATGGGATTCGAAGCGACTGAGCTTCGACTAGGACTGCCTAGCAGCAGAGAGGAAGCAGAAATGAAAAGTTCAAGCAAAAGAGGTTTTTTAGAGACCATGGATTTAAATTTGAAGCTTGAAACCTCCAATAACAACACTGAGAATTCAGCAAGGTTGTCCCCAGGATCAGTCAGTGAAGGTATGAGTCGAGTTGCAAGCCAGAAGAGTCTTCAGATAAATTCTGACATTGATGATCCTGCCAAGCCTTCTGCTCTGAAGTATGTCTTTTATTGATTAACCAACTTAATTTTGTAAAACTGGGATTCGTATTCTTATCATTTATTCAAAATTTTCATTGGATTTGGATAGATTTTTGGTTTAAGAAGCTTTACAGTTCTAACTTAAATTTTATAGATATGAATATGTTTGCGACTTTGATAAGTTTAAGAATCTCACATAAAGGAAGATGAAACAAAAGCTATCTAAATATAGTTCCATATGCTATTATAGGAATAAATTTGTTACACTGTAACCTGAAATATATTCCTTATATATGAGAGAACATGCAAATTGACAAGGTCCACTATTTACTATGTCTATGTGCATGCACACAATGCCATTTAGATATGAAATTTATGGACACCTTTGTATATTTCATTTTACTCATTGTTATAATGTAACAAGTTCATTTACATAGCTGTTATTGACATGATAAGAATAATTATTAGGTCTCAAGTAGTGGGATGGCCACCAGTTCGATCATATAGGAAGAGTTTGATGTCTGTACAATCTGGAAAAGGAAGTAAAGAAGAATCCAGCAGAGCTCAAGCAGCTTTTGTGAAAGTGAGTATGGACGGTGCTCCATATTTACGGAAAGTTGATCTCAAAGTGTACCGTAGCTACCAAGAACTTTACATGTCACTGGAGAAGATGTTCAGCTCATCAACAATTCGTAAGAGCAACTAATTATCCTTTTGGCATATCATGTGAAATTTGTTAGTTTCAGCATAAATTTTGTATCCCTTGTATTTTTCCATCTAACTAAACATAATATAACATGATTTTAAAAACGGGATCGGAATTGTAAATTGTTGGTTTAAATCTGTAATCGAAATTGGTGTCAAACCTTGTTTGCTAGAAACATTTCTCTATTAGGTTATCAAATAACATTTCTGTAAATTTTGATTCTTCTTTGATGTTTGAGAATCTATGTCTAACCTTAAACTTGATCACTTCTCTTGTAAACTCATTCTCAAAAAAAAAAAAAAAATATATATCGTTTCTCTTGTTCTATCTTTATTTTGATAAGAAAAACATTAAATTTTATATCCAACAATTAAATAAGTACCAATATTTTTGTTCCAGCATAGCTTAGATTTTTCTTCAACTGTGCTTTTTAATCAAATTTTGAGTCGAAAAAATGAATATCAAATCCTAATCGGATAGATTCGGTTTGAAGTGGAATTCAAAACATATGATTATAGTACTTGTACATAATAATCAATTGACTCAAAGATGATTTGAAAACACAACAAATTCTAATAAAGAAGTTTTGTGCTAAGCATACTAGAATTTGAGTTAACTAATATTTTTTATTTAATCTTCATAAAACAAAACTTCGCATGTAAACTTTGAGGAAGTCATACTGAACTCATAACACATATTTTAGATCATACTTGTACGGAGACTCTAATTCGTAATATTTGATCACTTAAACACATTGCATACAAACTGGGTAACACTATGTGGTTCCTAACTAGTATTTGTGCTAAGCATACTAGTCATCTGATTGCTATTTGAGTTAATTAAAAGAAATATCATAGCATAAACCTCTTTGTTAAACACATAGAACGATATTATATTAGCTATATTATAAGAAGAATACATTTATGATACATAAAAGAATCAAAGATGTTGATGTGAAATTAATTTGGAAGCTACCAAGAAAAGGATAGCAAGCATGGAGAACTTAATTAATTTGGACATGGAACAATTGGTAGGGTACATGAATTAATACGGCGCCTTTTAATACACGAACAATCATATCTATTTACATGTGATTGCCAGAGTATGCATGGTTTCTGAAAAATGCAAGTTGTGTACACTTACATGCATCTATATAAGATACTAGCTAGCCAGGTGTATTTTATTTTATTGCCTACTCAATCAAGATATAGTAGTAGTATTGTCATTGTAACATTAGTTATTAGTTTAAATGATTCGCTCCATTAAATTTGTTTAAACGAATGGTACATATGCTGTTGGTTGTTAGATAAGATATGTATATCTACAAAAAATATCATTCTTTAAGGTACAAATTATTCCCCATAAATTAAAGACAGTGTTTATTGTACTGACTCACAACTAGCTAAGATGCTTAATGCCGGTGGTGGTTGCAATAATTTTGACCCAATTTAATGTGTAATGTGCTTGATAGAATAAACATCTAGTTATGTAGATATGCAAAATCTATTTTGATATTGTTTATTTAAATAATTTTTCAATATAGGAAATTGTGGGTCGCAAGATCTGCTAAATGGTTCAGAGTATGTACCAACTTATGAAGATAAAGATGGGGATTGGATGCTTGTAGGTGATGTTCCCTGGGAGTAAGTTCTTGATTTTATTATTTACTTTAGTTACCTACTTAAAAGTTCATCTAACTTTTCTTCAGATTTATATATATACATATGTATATATCTATAATGCATTCAAATTTACAGGATGTTTGTAGAATCTTGCAAGCGTTTAAGGATCATGAAAGGTTCAGAAGCCGTAGGTCTGGGTGAGTGTATATATACATTGTTTACTCTGCTATACATACTTCATAATATGAAATCAAAACTCATGTGTAGTATCAATATCATTATGAGTTTCAACATCAAAATAAAAAGTGAATAATAAAAGTCATGAGTTCTAATTTTATTTTATTGTTATGTCTAACCAGCTCCAAGAACAATGGAGAAATGCAAGAACCGTAGCTAAGCCAAGATTCAGGGTTATAAAAACTGGACTTAAGTGTCCGATCTGAATTAAGCATTGCATTACAATTGTGTGTATTTCATCATAATATGTGTACTAAGTTATAGTATGTGATGATCAGTGTTTATAGAAATAGGATTATAATTTTTGTGTACGGTCACCATGAATATTAACTGTGAACGTCCATCGTGTCTTCTATGTATATGTTTGTTTTTGTGTTGTTTGTATAATTTGAACTCATTTTTTTGTTTTGTAGTATCATCCTCTCACGCATTGTGTGTGTCTATGCGCCTGCGTTGAAACACAAAATGGGATAGATGTTGGTTTGAATTTCATTCGGATTACGAGGAGAGGCAATTGAACATTATTGTCTTCGTTTCCTCTTCTAAGTTGAATAGCGCTATTCATGTTCAGTCGTTTCCTTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020276523.1	7.0e-73	auxin-responsive protein IAA30-like
Swissprot	P0C132.1	1.0e-60	Indoleacetic acid-induced protein 30
trEMBL	A0A5P1EGF1	5.1e-73	Auxin-responsive protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G04730.1	52.73	1e-63	239	IAA16	indoleacetic acid-induced protein 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G02439	AT3G23050.1	253	70	8	9	234	6	243	55.73	8e-64	239
AfisC1G02439	AT3G04730.1	256	70	7	9	234	2	236	52.73	1e-63	239
AfisC1G02439	AT4G14550.1	245	75	7	9	234	1	228	54.69	6e-62	233

Ortholog group

Species	Genes
Allium cepa	g191266.t1
Allium fistulosum	AfisC1G02439
Allium sativum	Asa7G03114.1
Arabidopsis thaliana	AT1G04250.1; AT3G04730.1; AT3G23050.1; AT3G23050.2; AT4G14550.1
Oryza sativa	LOC_Os03g43400.1; LOC_Os12g40890.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02309.13	AUX_IAA	Family	14	225	246.5	2.9e-73

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003993	F	acid phosphatase activity
GO:0005634	C	nucleus
GO:0005740	C	mitochondrial envelope
GO:0005768	C	endosome
GO:0005802	C	trans-Golgi network
GO:0006109	P	regulation of carbohydrate metabolic process
GO:0006417	P	regulation of translation
GO:0046983	F	protein dimerization activity
GO:0009414	P	response to water deprivation
GO:0009611	P	response to wounding
GO:0009630	P	gravitropism
GO:0009734	P	auxin-activated signaling pathway
GO:0009753	P	response to jasmonic acid
GO:0009941	C	chloroplast envelope
GO:0010311	P	lateral root formation
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0030943	F	mitochondrion targeting sequence binding
GO:0043565	F	sequence-specific DNA binding
GO:0045040	P	protein import into mitochondrial outer membrane
GO:0080167	P	response to karrikin
GO:1901332	P	negative regulation of lateral root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14484	IAA; auxin-responsive protein IAA	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network