result

Gene information

Detail information of AfisC1G02447

Location

Gene	Chr	Start	End	Strand
AfisC1G02447	chr1	445007049	445008603	+

Sequences

CDS

Protein

Gene

>AfisC1G02447
GTCAAGGGAGTAGTGACTTCGCCCAACAAAGACTTTAAAAAAACACGGAGAAACTTGTTTACGTAATTAAGGAAGTTACCAAGAAAAATGGTTTGAGTTTACTTAACGATAATTTCGATAGAAATTCCCCAACAGTTCGGATAATAAAGTTGTACGACTTAAAAATAGTAGACTAGCATTTATGTACGATTCATTAGAACATGAGAGCTACAGCATCGAAGGATAGAGGGTCTCATGACCCACACACATGGGTAGCACTCTCCATGATAGGGACCCATCTCTAAATTCCGGGTAGCCCTGGCCTACAGGCCATGATGAAGCGGGCACTTGTTTAATGGATGCTTCCCACCCAACCGACAAGTCTGGTTGTCATTGCTCCCACCTTGAGAAAATCAACCTACACCTTATATTCCCATCTTATCTCTCTATGTATCCCAATACATATATCATCCCTCCCCTTTATTCATCAGCCATACAAACATACAAAGTAATGGAAGGAACAAGAAATCTGGAATTAAGACTCGGGTTACCGGGTGCGGACGATGTGCAAAGAAACCCGGCTCGTGGTACCAAACGGGTATTAGAAGACGATACTGGATGCGAGATCAGGTCATCAGAGCCTGGCAGCTCCACAGGAAATGATAAAGAAGCTACACAGCCTGCTTCTAATTCTAAGTAAGCACTATGTTATGACAATTTTTTCTATAATAGGCATAATTTTTTTGCTGCACCAGCTACATAAACAGAAGATTAAAACATTTGCTTCAAGTTCCTTAGCATTTAAAATTTGTTTTGGAAAGGGAGCAAGTAGTAGGATGGCCACCAGTACGATCATACAGAAAAAATGCACTTCAAGTGAAGAAGACAGAAGCAGCAAGCGGATGCATGGTAAAAGTAAGCCTAGATGGAGCTCCATATTTAAGAAAGATGGATTTGAATAACTATGGAGGGTACAAGGAGCTAAGAGAAGCACTAGAGAGCATGTTTAAGGGTTTTTCATTAGGAGAGATTTCAGAAATGGAAGGATGCAACTATGCCATTACATATGAAGATAAAGACCAGGATTTGATGCTCGTTGGAGATGTGCCATGGGACATGTTCATTTCATCATGTAAAAGGTTGAGGATCATGAGAAGGACTGATGCAGGATTTAGTTCTAAGCAATGAAGTAGTTGTTGATTTTGAAATTGTATATAGTTTttTGCTGCTGCTGCTGCTGCTGCTGCTGCACATGTCTTTTTTTGAAATGAAATCAAAATTTTGAATTGTGTTATGATAGAATATGGAGTGTAAATGCAAATTGGATATGATGACTAACAAATAAACTTGCTGATGATTTCATCTGTTCCTACATTGATAAATGAGTTTTCATTATGACCCATAAAGGAGTCCATACACATGCAAAATCATAATCTGTGTGAGAGTAAATCCTGAAGAACTAACTAATCATGAAGAAACAAAAACAACAGAATGACACACAAGGGAGCAAAGTATTAATTAAGACAGACACGAGGACAAGATCTAAAGTTATAAGTTGCAAGTTGTGTGAAACGAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008788132.1	3.0e-47	auxin-induced protein 22D-like
Swissprot	P33077.2	1.2e-40	Indoleacetic acid-induced protein 4
trEMBL	A0A8B7BYT9	2.2e-47	Auxin-responsive protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G04240.1	52.43	2e-42	168	IAA3;SHY2	AUX/IAA transcriptional regulator family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G02447	AT1G04240.1	185	66	5	57	229	8	182	52.43	2e-42	168
AfisC1G02447	AT5G43700.1	187	74	6	47	229	4	178	51.87	3e-42	168
AfisC1G02447	AT4G29080.1	247	77	7	60	229	44	290	37.65	2e-36	149

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02309.13	AUX_IAA	Family	77	230	168.7	1.8e-49

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001101	P	response to acid chemical
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003993	F	acid phosphatase activity
GO:0005740	C	mitochondrial envelope
GO:0005768	C	endosome
GO:0005802	C	trans-Golgi network
GO:0006109	P	regulation of carbohydrate metabolic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0009733	P	response to auxin
GO:0009941	C	chloroplast envelope
GO:0044212	F	transcription regulatory region DNA binding
GO:0030943	F	mitochondrion targeting sequence binding
GO:0045040	P	protein import into mitochondrial outer membrane
GO:0080167	P	response to karrikin
GO:1901700	P	response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14484	IAA; auxin-responsive protein IAA	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network