result

Gene information

Detail information of AfisC1G02461

Location

Gene	Chr	Start	End	Strand
AfisC1G02461	chr1	448914174	448916150	-

Sequences

CDS

>AfisC1G02461
ATGGGTGCTTCTTGCCGCTCAAAAAAAGCAGTCAAAGAAGATGACGATAGGGAAGAACAAACTCTAGATGTTGAAAAAGAAATGGGAAGCAGTGAACCCAAAGACAACAACCTTCCGACATTTACTTTGGCTGAATTCGAGGATAATTTCAATGCTGAATCTCTACTGGGAGAAGGGATATTAGGTCAGGTTTATAAAGGAATATTGAAGACCACGAACAAGGCTGTAGCAATAAGGAGGCTTAATCCTATGGGCCCTCAGAGGCAGGACGAATTTCTCAGTGAAGCAAAGATGTTGAGTAGGCTTGACCATCCTAACATTGTCAAAGTGATTGGATTTTGTATGGAAGGAGAACACAGACTCATAATATACGAGTACATGCCACTTGGTTCACTGGAATACCATCTGTCTAGAAACAGTTCAGATATGAAGCCACTGGATTGGAATACAAGAAAGGAAATTGCATTGTGTGTGGCCAAAGGGTTAAAGTATTTGCATGCCGATCAAGATCCGCCTGTTATACATCGAAATTTGAGAAGTTCAAATGTTTTACTTGGAGAAGGCTACGAAGCAAAATTATCGGATATTGGAATGGCTGAAAAAGGAAAGTCTATTAGCATGCATGAATATCCAGAGATGGGTAAATTGACTGTAGAATCTGACATATATGGATTTGGTTTGCTGCTTTTGGAGATTATTACTGGTAAAAAGGCCACTGGTAATTCTAGCAGCAGTTCAAAAGCGCAAAATCTTGTTGCTTGGGCAGAGCCATACTTGAAGGATAAAGAAAGAGCGATGCAAATTGCAGATTTGTCGATGGGAGATTTAAAGGAATCTGAATTTCGTAAAGCTGCATATTTAGCTGCAGAGTGTTTGCAAGAGGATGCAAGCAGAAGGCCTCACATAGATGAAATTATCAATACTCTTACTTATGCTTGTCCATGGGAAAAACAATATGCTGACGAAATATCGGGTAGTGGATCGAGGAGGTCGAGCTCTGCTAAATGA

Protein

Gene

>AfisC1G02461
ATGGGTGCTTCTTGCCGCTCAAAAAAAGCAGTCAAAGAAGATGACGATAGGGAAGGTCTTCTCAGAGCAATTTCAGGTTATCAAGTTCAAGTTTTATGAAGATTTCTGTCTTTGTTTTTTTTTCCCCCCTTTTTCAGTCTCTTTTTTAGTTTTTTATGCTCATGGTTTGATGTTCTTTTGTGTTCAGAAAGTTCACCTGTGTTTAGGTTTGATATTCATGGTTTGAACATAAATTCCCAATCTTGACGACATATAACGATTGCCATTTATCTTGATAATTCATGTCAAGATTAAATTTATATATTATTATTAGCATCAATGGTTTTGAATTTCGTCAAAGAAAACTGTGATTTCATTCTCAAGAAGAGCAGGGATTGATTTCTTGGTTTATTTTCACAGCAATTAATCAAGAGAACGTTAGTTTCATTATGGCAGAAAATTTCGTTTTACAATAACTTCTTGGTGACTAATATCATTTTGTCAGTAGGCACAAATATTATTACCAGGCATTTACTAGATTACTTTGATTTAAGTCTAAAATTCCGTGTGATTGTGTGAAATTTTAATTATATTTAAAACGAAGCCATCGTGGGGTAAAAATTATAAAGGTGCTTAAAGCCAAAAAGTTCTTCCAATATAGTGTTAATAAACGTCTTTTCGTGTTCTTTTACATCCTCATAATCTTATCATTATTTTTGGTTAGAACAAACTCTAGATGTTGAAAAAGAAATGGGAAGCAGTGAACCCAAAGACAACAACCTTCCGACATTTACTTTGGCTGAATTCGAGGATAATTTCAATGCTGAATCTCTACTGGGAGAAGGGATATTAGGTCAGGTTTATAAAGGAATATTGAAGACCACGAACAAGGTATAAGTATTTATATTCTAATACCTAGTGCTATCAATCATATTGAGTAATGTTACATGAAATCTTATTAATTAGTAATCAAAAAATACAACAGGCTGTAGCAATAAGGAGGCTTAATCCTATGGGCCCTCAGAGGCAGGACGAATTTCTCAGTGAAGCAAAGATGTTGAGTAGGCTTGACCATCCTAACATTGTCAAAGTGATTGGATTTTGTATGGAAGGAGAACACAGACTCATAATATACGAGTACATGCCACTTGGTTCACTGGAATACCATCTGTCTAGTATGTATATCATATCTATCTTTTTCAAATATGCATTCCAATTTCCAAGAATGATATTTTAAAATTTGCTCCATTGTGCACAGGAAACAGTTCAGATATGAAGCCACTGGATTGGAATACAAGAAAGGAAATTGCATTGTGTGTGGCCAAAGGGTTAAAGTATTTGCATGCCGATCAAGATCCGCCTGTTATACATCGAAATTTGAGAAGTTCAAATGTTTTACTTGGAGAAGGCTACGAAGCAAAATTATCGGATATTGGAATGGCTGAAAAAGGAAAGTCTATTAGCATGCATGAATATCCAGAGATGGGTAAATTGACTGTAGAATCTGACATATATGGATTTGGTTTGCTGCTTTTGGAGATTATTACTGGTAAAAAGGCCACTGGTAATTCTAGCAGCAGTTCAAAAGCGCAAAATCTTGTTGCTTGGGTAAGACCTGTCATCCGGTACATAAACGTGCACATGCACACTCAGTTAAGTTTTTAAACATATAACTGCAATTATAAATTATATGTGTTCTATAATGCAGGCAGAGCCATACTTGAAGGATAAAGAAAGAGCGATGCAAATTGCAGATTTGTCGATGGGAGATTTAAAGGAATCTGAATTTCGTAAAGCTGCATATTTAGCTGCAGAGTGTTTGCAAGAGGATGCAAGCAGAAGGCCTCACATAGATGAAATTATCAATACTCTTACTTATGCTTGTCCATGGGAAAAACAATATGCTGACGAAATATCGGGTAGTGGATCGAGGAGGTCGAGCTCTGCTAAATGAATTTGACAGCAGACAGATAATGAAGTGTTAGAATATCTTATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_021624237.1	8.8e-69	LOW QUALITY PROTEIN: probable serine/threonine-protein kinase PBL7
Swissprot	Q1PDV6.1	8.0e-67	Receptor-like cytoplasmic kinase PBL27
trEMBL	A0A2N9HMM5	3.7e-69	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G18610.1	47.42	7e-70	260		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G02461	AT5G18610.2	291	133	4	40	311	70	359	47.42	7e-70	260
AfisC1G02461	AT5G18610.1	291	133	4	40	311	70	359	47.42	7e-70	260
AfisC1G02461	AT5G02800.1	291	136	4	40	311	60	349	46.39	2e-67	252

Ortholog group

Species	Genes
Allium cepa	g317237.t1
Allium fistulosum	AfisC1G02461
Allium sativum	Asa7G02452.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	53	309	133.0	1e-38

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0004674	F	protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0040007	P	growth
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009941	C	chloroplast envelope
GO:0010183	P	pollen tube guidance
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0046777	P	protein autophosphorylation
GO:0071323	P	cellular response to chitin
GO:0090404	C	pollen tube tip
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network