Gene information

Detail information of AfisC1G02502

Location

Gene	Chr	Start	End	Strand
AfisC1G02502	chr1	458850744	458851471	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274572.1	3.5e-25	probable WRKY transcription factor 12
Swissprot	Q9SVB7.1	6.8e-10	WRKY DNA-binding protein 13
trEMBL	A0A5P1EGL8	3.3e-25	WRKY domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G39410.1	47.46	4e-12	66.2	ATWRKY13;WRKY13	WRKY DNA-binding protein 13

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G02502	AT4G39410.1	59	31	29	87	223	281	47.46	4e-12	66.2
AfisC1G02502	AT1G69310.2	58	28	29	86	147	204	51.72	1e-11	64.7
AfisC1G02502	AT1G69310.1	58	28	29	86	147	204	51.72	1e-11	64.7

Ortholog group

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	29	86	67.2	1.1e-18

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006817	P	phosphate ion transport
GO:0008134	F	transcription factor binding
GO:0009414	P	response to water deprivation
GO:0009624	P	response to nematode
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0010055	P	atrichoblast differentiation
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032107	P	regulation of response to nutrient levels
GO:0034605	P	cellular response to heat
GO:0043620	P	regulation of DNA-templated transcription in response to stress
GO:0048527	P	lateral root development
GO:0051607	P	defense response to virus
GO:0070301	P	cellular response to hydrogen peroxide
GO:1901002	P	positive regulation of response to salt stress
GO:1901141	P	regulation of lignin biosynthetic process
GO:1904369	P	positive regulation of sclerenchyma cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network