result

Gene information

Detail information of AfisC1G02521

Location

Gene	Chr	Start	End	Strand
AfisC1G02521	chr1	461946376	461950367	-

Sequences

CDS

>AfisC1G02521
ATGGACAATAGGACCGAAGATGATGAACTAATAGTAGACTATGTTGACTGTCTCATGTCTTTACCAACAAATATAAGATCGAATGATGCAACTGACCCGTGTCCCCAAATTACAATTCCGACCCAAGAACCCGCTAACTTTAATCCAAGTCAAGTCAATACAGATGACACAAAGCCCGAACCCGAATTAGGTATGGAATTTCCATCTGATGAGGCTGCAAAAATCTTTTACAATGAGTATGCACGTCGATTAGGGTTTCCATTCCGAGTTGGTAGGTCTAGAAGATCGAAAGGGGAAGAAGAGGTATTGATCATGAAGAGATTTGTATGTTCTAAAGAGGGTGTTTATAGTAAAAAGCCAGCTAGTGAAAACACGAGAAAGCGCGAGAGGATCTCCATGAGAGAAGGTTGCAAGGCAATGATGGAGGTTGTCAGAGATTCGGACAAGTGGGTTGTGGCCAAGCTTGAAAAAGAGCACAATCATCATTTGGGTACTAGTAGTAGAGTAGGCTATCTTAGAGCTAGAGGATTTGTAGATGCTTGTGATAAATCAAACATATGTGGTTCCGATTCAATCACGATATTAAGGCAAAATGCCCTTGGGGAATGTGGCGATATTCAAGGATTACTGGATTATTTCAAGAAGATGCAGGCAGAGAGCCCTGCATTTGTTTATGCTTTACAAGTTGATAATAATAGTTCTGTGACTAATGCATTTTGGGTCGATGCTAGAGCTAGACACTCGTATAGCTATTTTGGTGATGCAGTTACTTTTGATACAACTTATAAGAAGAATAAGTACATGATGCCATTTGCTACTTTCTCAGGAGTTAATCATCACTTGCAACCTATTACTTTTGGATGTGGGTTGCTTGTAGATGAGTCTGAATTCTCATATGTTTGGCTATTTGAAGCATGGCTCGAAGCCATGGGTGGTAGACATCCTATTTCATTGGTTACAGATCAAAATAGAGCTATAGCAGCAGCAGTTGCAAAAGTGTTTCCCAACACTTGTCATAGGTTTTGCAAGTGGCTTATTCTTAGTAGAACCAAACAAAAGTTAGCTCATTTATATTCTTCTTATCCTAATTTGCGAACAGAAGTTGAAAATTGCGTCCTTGAATCTCAAACGGTTAGAAATTTTGAGACTTGTTGGGTGTCTATAGTAGATAAGTACGATCTTAGGAAGAATACCTGGTTACAATCTTTGTTCAATATTCGTCAAAAGTGGGTACCTGTGTACTCAAGAGATGTGTTTTTTGCTGAGGTATCACCAATACAAAGATTAGAGACCATGAACGACTTTTATAAGAAGTATTTTAACACAAAAACTTCTTTAAAAGTGTTCCTAACCCAGTTTGATGTGGCCATGGCAAGCAGATACGATGATGAAGCACAAGCAGATCTGGACGCAATGTGTACTAAACCGATTATAAAAACTGCATCTCCTTTGGAAAAACAAACAGCTACCATATACACAAGAGCTGTCTTCGAAAAATTTCAAGAGGAGTTTGTTGAATCTTTAGGGTATAGTGCATACAAAATAAAGGATGGACTGATTAGCAAGTTCAGTGTCGCTAGGGATGACGAGACTCTTGAGATGTTCACCGTCACTTATAACTCTGTAAACAAGACGGCAACATGCAGCTGTAAAAATTTCGAGTATTCTGGCATTTTGTGCAGGCATATATTAGGTGTGTTTGTGATGGTTGATATTCGTATGCTTCCAGATGAGTATTTTTTGAGGCGCTGGACTAGAAATGCTAAAGGTTGTACTCAAATTGATGAACAAAATTCCAGACATCAAGGTAATTGTCAAGAAACTATTGCATCGAGATTCAGTGATTTATGCAAAGATGCTATTAGATATGCAGAGAGAGGTGCAACTTCTGCTGAAATTTATAGTGTGGCAAAAGGTGCATTGCATAGAGCATTTGATGAGATAGTAGTTGTTGAAAGAAATTGTGGTCGAGAAGAGCAGAGAGATCCAATCAATATTAATGAGGAAATTACTTTAGATGAAGCAATGAGCGACCAATCATTAAATGATCAATCTTTGCAGGATCCAGGGAGGAAGCAGGTGAATAATTTACTTGGACAGCTCCTTGGTACTTCATGGTCACCCATATGA

Protein

Gene

>AfisC1G02521
CAAAATTACACAGGATCCCCGAACTTGCGGTGTGAATAAGCTACACAGATCTCCGGTACTCCGCTGCTGCTCCAGTTTCCGATCACCTCCCGGTACTTTTAAGCTCTTATATTGTTTTATTAAGGCATCAAGCTACCCATCTCCGACGATCTCGTCACCGCCGGTGAACTTACCTCACCATTTCTTCCCTTACCCATCTAATCCGCAAAAATACTTTAGGTAACCTTCAATCTTCTCCATTACGTTAACTCATATACTTTTATTTCAATATAAACGATTTTTATTAAGTGGAGGTAAGCTTACCGCCTCGGTTCATGTTTTATAATTAGGTTTAGAAAATTTTGCTAATTAGGGTTTTTGGGTATGTGTTTTGTAATCGTAATTTCAACGCAAATTTGATAGTGGCCGCTTAATACAGCAACAAAGCAGAACAAAATCCTTCTGAAATATACTTAATCTTCATTCATGATTCTGCGTTAGTTAATTATGCTAACTTTGATTTTCTTCTAGCACTTTCAACCTCAATTACGAGAAATAAAATTGTGTATGTTTTAATAAATATCTCAAGTTAACTAATACGATCAGTTTCATCCCAAATACATTGTACACTTTAATGAAGGATAGCAATGCACCACAAAAGTTAAACTTCATTTAATCCTTAAAGAAATATAAATGTGAATGATTTTCAGGTGTGTTTGTACAACTTAACAATGGACAATAGGACCGAAGATGATGAACTAATAGTAGACTATGTTGACTGTCTCATGTCTTTACCAACAAATATAAGATCGAATGATGCAACTGACCCGTGTCCCCAAATTACAATTCCGACCCAAGAACCCGCTAACTTTAATCCAAGTCAAGTCAATACAGATGACACAAAGCCCGAACCCGAATTAGGTATGGAATTTCCATCTGATGAGGCTGCAAAAATCTTTTACAATGAGTATGCACGTCGATTAGGGTTTCCATTCCGAGTTGGTAGGTCTAGAAGATCGAAAGGGGAAGAAGAGGTATTGATCATGAAGAGATTTGTATGTTCTAAAGAGGGTGTTTATAGTAAAAAGCCAGCTAGTGAAAACACGAGAAAGCGCGAGAGGATCTCCATGAGAGAAGGTTGCAAGGCAATGATGGAGGTTGTCAGAGATTCGGACAAGTGGGTTGTGGCCAAGCTTGAAAAAGAGCACAATCATCATTTGGGTACTAGTAGTAGAGTAGGCTATCTTAGAGCTAGAGGATTTGTAGATGCTTGTGATAAATCAAACATATGTGGTTCCGATTCAATCACGATATTAAGGCAAAATGCCCTTGGGGAATGTGGCGATATTCAAGGATTACTGGATTATTTCAAGAAGATGCAGGCAGAGAGCCCTGCATTTGTTTATGCTTTACAAGTTGATAATAATAGTTCTGTGACTAATGCATTTTGGGTCGATGCTAGAGCTAGACACTCGTATAGCTATTTTGGTGATGCAGTTACTTTTGATACAACTTATAAGAAGAATAAGTACATGATGCCATTTGCTACTTTCTCAGGAGTTAATCATCACTTGCAACCTATTACTTTTGGATGTGGGTTGCTTGTAGATGAGTCTGAATTCTCATATGTTTGGCTATTTGAAGCATGGCTCGAAGCCATGGGTGGTAGACATCCTATTTCATTGGTTACAGATCAAAATAGAGCTATAGCAGCAGCAGTTGCAAAAGTGTTTCCCAACACTTGTCATAGGTTTTGCAAGTGGCTTATTCTTAGTAGAACCAAACAAAAGTTAGCTCATTTATATTCTTCTTATCCTAATTTGCGAACAGAAGTTGAAAATTGCGTCCTTGAATCTCAAACGGTTAGAAATTTTGAGACTTGTTGGGTGTCTATAGTAGATAAGTACGATCTTAGGAAGAATACCTGGTTACAATCTTTGTTCAATATTCGTCAAAAGTGGGTACCTGTGTACTCAAGAGATGTGTTTTTTGCTGAGGTATCACCAATACAAAGATTAGAGACCATGAACGACTTTTATAAGAAGTATTTTAACACAAAAACTTCTTTAAAAGTGTTCCTAACCCAGTTTGATGTGGCCATGGCAAGCAGATACGATGATGAAGCACAAGCAGATCTGGACGCAATGTGTACTAAACCGATTATAAAAACTGCATCTCCTTTGGAAAAACAAACAGCTACCATATACACAAGAGCTGTCTTCGAAAAATTTCAAGAGGAGTTTGTTGAATCTTTAGGGTATAGTGCATACAAAATAAAGGATGGACTGATTAGCAAGTTCAGTGTCGCTAGGGATGACGAGACTCTTGAGATGTTCACCGTCACTTATAACTCTGTAAACAAGACGGCAACATGCAGCTGTAAAAATTTCGAGTATTCTGGCATTTTGTGCAGGCATATATTAGGTGTGTTTGTGATGGTTGATATTCGTATGCTTCCAGATGAGTATTTTTTGAGGCGCTGGACTAGAAATGCTAAAGGTTGTACTCAAATTGATGAACAAAATTCCAGACATCAAGGTAATTGTCAAGAAACTATTGCATCGAGATTCAGTGATTTATGCAAAGATGCTATTAGATATGCAGAGAGAGGTGCAACTTCTGCTGAAATTTATAGTGTGGCAAAAGGTGCATTGCATAGAGCATTTGATGAGATAGTAGTTGTTGAAAGAAATTGTGGTCGAGAAGAGCAGAGAGATCCAATCAATATTAATGAGGAAATTACTTTAGATGAAGCAATGAGCGACCAATCATTAAATGATCAATCTTTGCAGGATCCAGGGAGGAAGGTATGATCAGGCTACTCTTGCTATCAATTTCAGATTTATTTGTTTAAATATATTATTTTAGTGGCTTTGTAGTATGAAACCCTCAAATGTTTTTCACTTGTTGATGTCATGTTGGTTACCAAGTAGATAATTTCTGGTAATAAGGTGATATTTCATTCAGTCACTGGTATATTGCATATTGAATTTTAAACAATATTTTTTGAAGAACCGGCTAAAATATCCAGCCGCAATCTTTGTGGATATATCAGGGATGTTTAGCCGATATTTGATGCAAATTTATGTGAAAGTAGTTAAAAATTAACAGAAAAAGTACATATACCTCAGACAACAGCAGTTCTTTATATAAATATATATTGCTAAACGATCTAGCAGTTATTTGAAATGATAAAAAGAGAAGGGAAGTTTCTAAGTTTCAAAGTACACTTCCAACTATTCTAAAAATTAGGTCTCACAAAACACCCTTTGAATTACTTTTAAGAAAATTTGCATTTTTCCACGAATATTTGCTTTCCACAAAAGAAAACACGTATGTCCTCTATTGTTACCATAATTTGCATATTTGGATAACAAACACTATTACTCCGATATTATCTTGATATTACGGCGATATTTTCAGATATCCATATGTATTCTTAACTTATATTTTACCGGTGGTAATGTTTGAAACATGTTTAGAATAACTCATCCATATATTGACATTATCAAGTTGATTACTTCGGATGTCTTGTTAATATTGTGGTAAATATCATCATATTTTGTTAATCAATATTAGTCAAGAGGCAGCTAAGTTTTGCGCCAATTTCATAGCATAGAATACTTCTTCTGGAATTTTGGGGTAAATTTACCTTTTTATTTTTAGAAAAGTAACTAAAATTTTCGCTTTTATAATATTACAGCAGGTGAATAATTTACTTGGACAGCTCCTTGGTACTTCATGGTCACCCATATGAAGCTTTTAAGAGTTCCGTTTATGCTTGCATCATAACACCCTAATTTCAAAAGAAAGAAGTGTTTTGTATCATTACTTTGGTTGCCATAGCTGGTTGACTGCTGCATCGTATAGGATTGTTGGCCAAAAATGGTGTTGTTTATTTACAGAACCAAACTGTCTGTTGTATTTAAGCAGTCGGCTAAGATTTTACTTATATATCTGTATGTTAATTGAAAAGAGAAGAAAAGATTAGGGCCCGTTTGGTTTGCTGTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020255961.1	0.0e+00	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9ZVC9.2	3.5e-136	Protein FAR1-RELATED SEQUENCE 3
trEMBL	A0A6I9QTB9	1.4e-299	Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G27110.1	41.84	1e-138	490	FRS3	FAR1-related sequence 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G02521	AT2G27110.2	619	317	9	60	657	48	644	41.84	1e-138	490
AfisC1G02521	AT2G27110.1	619	317	9	60	657	48	644	41.84	1e-138	490
AfisC1G02521	AT4G38180.1	636	349	8	45	644	55	689	39.31	2e-135	479

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03101.12	FAR1	Domain	76	163	79.4	2.3e-22
PF10551.6	MULE	Domain	256	347	96.1	1.2e-27
PF04434.14	SWIM	Domain	536	568	37.1	1.5e-09

Gene Ontology

Accession	Ontology	Name
GO:0005488	F	binding
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0010017	P	red or far-red light signaling pathway
GO:0010218	P	response to far red light
GO:0016620	F	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0044710	P	single-organism metabolic process
GO:0044763	P	single-organism cellular process
GO:0048518	P	positive regulation of biological process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K17604	ZSWIM3; zinc finger SWIM domain-containing protein 3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network