result

Gene information

Detail information of AfisC1G02526

Location

Gene	Chr	Start	End	Strand
AfisC1G02526	chr1	464508910	464510417	+

Sequences

CDS

>AfisC1G02526
ATGTTTTTCAGAGCGAACCAGAATAAACCACAATCAATTGTCGATTCGGATAACGAAACGCTAAACTCAAGCACAAGCTCAGTCAGCAACAACAGCTGTTCCGAAACCGAAACCAGCCGTCGCTGCAGCAACCTTTCTCAATCCTCAGATCAATCGTCGATCAAATATCTCGATCTTCAGTGCCATGACTTCAAAATTGTCCGCAAAATAGGTAGCGGAGACATCGGAAAAGTGTACTTGTGCCAAATGAGAAACGACGATTCGAAAAAATTGTACGCCATGAAAGTTGTTGACAAGCAAGTCCTCAAATTGAAAAATAAAGTTCAAAGGGCTGAAACCGAAAAAAGAATTTTAAGGGTTTTGGATCATCCCTTTCTTCCTAAAATGTTCGCCGAATTCGAAGCTGGAGAAAATCATTCATGCGTTGTAATGGAGTACTGTTGCGGGGGCGATTTGCATTCTTTGAGATTCAAACAGCCTCGAAGAAGATTTTCACTTAATGCTGCAAGATTTTATGCTGCTGAGGTACTAATAGCCCTAGAGTATCTACACATGCTGGGTATAGTTTACCGTGATCTTAAACCGGAAAACATACTGATCAGATCGGACGGTCATATCATGCTCTCCGATTTCGACCTCTCCCTCCAGTCCACGTCATCCCCTTCTTTTCAAACGATAGTCGACCCCACCGCTCTAACAAGAAAGCCACGTCGGCGTTTCGCTCTATTCCGGTCTAGGTCCCGAACCAAGCCTGAACCGGTGCAGACCCGCTTCGTTGCAGAACCGGTTTCGGCCAGGTCCAATTCCTTCGTGGGAACTCACGAATACGTCTCGCCTGAAGTTGCGTCCGCGCGCGGACACACGAACGCGGTAGACTGGTGGGCTTACGGCATCTTTCTGTACGAGATTATGTATGGGGAAACTCCGTTTGTAGGACCTACTAACAAGGCTACGCTGAGCAATGTTATTAACAAAGAGTTATGCTTCCCGGTAAAGTGTTCCCCGGGAGAGATACCGGTTAGAAATTTGATAGCTGGGTTGTTGAATAAGGATCCGAATGAACGTATTGGGTCCAAGTGTGGTGCTGCGGATGTCAAATGTCATTCATTTTTTAACGGGTTGAATTTTGCTTTGATGAGATCCGTTAAGCCGCCTTATGTACCCGGGATGAAGCGGGTCGGACCTTGCAAGGTTGAACGAGGGTTGAAGCACGAAAGATTTGATTATTTTTGA

Protein

Gene

>AfisC1G02526
ATGTTTTTCAGAGCGAACCAGAATAAACCACAATCAATTGTCGATTCGGATAACGAAACGCTAAACTCAAGCACAAGCTCAGTCAGCAACAACAGCTGTTCCGAAACCGAAACCAGCCGTCGCTGCAGCAACCTTTCTCAATCCTCAGATCAATCGTCGATCAAATATCTCGATCTTCAGTGCCATGACTTCAAAATTGTCCGCAAAATAGGTAGCGGAGACATCGGAAAAGTGTACTTGTGCCAAATGAGAAACGACGATTCGAAAAAATTGTACGCCATGAAAGTTGTTGACAAGCAAGTCCTCAAATTGAAAAATAAAGTTCAAAGGGCTGAAACCGAAAAAAGAATTTTAAGGGTTTTGGATCATCCCTTTCTTCCTAAAATGTTCGCCGAATTCGAAGCTGGAGAAAATCATTCATGCGTTGTAATGGAGTACTGTTGCGGGGGCGATTTGCATTCTTTGAGATTCAAACAGCCTCGAAGAAGATTTTCACTTAATGCTGCAAGGTTTGTACTCCGCTACTCTATATTTCGATTTTTTTTTAACTTTTTTGCAAATTAGTATGATTTAATAATAAAATTTAATTAATTCACCAGATTTTATGCTGCTGAGGTACTAATAGCCCTAGAGTATCTACACATGCTGGGTATAGTTTACCGTGATCTTAAACCGGAAAACATACTGATCAGATCGGACGGTCATATCATGCTCTCCGATTTCGACCTCTCCCTCCAGTCCACGTCATCCCCTTCTTTTCAAACGATAGTCGACCCCACCGCTCTAACAAGAAAGCCACGTCGGCGTTTCGCTCTATTCCGGTCTAGGTCCCGAACCAAGCCTGAACCGGTGCAGACCCGCTTCGTTGCAGAACCGGTTTCGGCCAGGTCCAATTCCTTCGTGGGAACTCACGAATACGTCTCGCCTGAAGTTGCGTCCGCGCGCGGACACACGAACGCGGTAGACTGGTGGGCTTACGGCATCTTTCTGTACGAGATTATGTATGGGGAAACTCCGTTTGTAGGACCTACTAACAAGGCTACGCTGAGCAATGTTATTAACAAAGAGTTATGCTTCCCGGTAAAGTGTTCCCCGGGAGAGATACCGGTTAGAAATTTGATAGCTGGGTTGTTGAATAAGGATCCGAATGAACGTATTGGGTCCAAGTGTGGTGCTGCGGATGTCAAATGTCATTCATTTTTTAACGGGTTGAATTTTGCTTTGATGAGATCCGTTAAGCCGCCTTATGTACCCGGGATGAAGCGGGTCGGACCTTGCAAGGTTGAACGAGGGTTGAAGCACGAAAGATTTGATTATTTTTGACGATTTGTTGGTGGTAGTAATTGTTAATTAGTGGGAAATGAGTTAGGGATTAGGTTGTTAATAGAGTTGTTGACTTTGCTAACTCGGATAATTAATGAATCGGATTATTTTTGTAATTGTTGGGTGCTGTGTTTAGACTGGATGTGATCTGGATATTATTAGATACAGAACAAGCACTTTAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_016727172.1	4.0e-116	PREDICTED: protein kinase PINOID-like
Swissprot	O64682.1	7.7e-112	Protein kinase ABRUPTUS
trEMBL	A0A8B7C9J2	1.7e-116	protein kinase PINOID-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G34650.1	58.06	9e-121	430	ABR;PID	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G02526	AT2G34650.1	372	133	7	59	410	70	438	58.06	9e-121	430
AfisC1G02526	AT3G12690.3	368	151	6	63	401	184	539	47.83	5e-94	341
AfisC1G02526	AT3G12690.2	368	151	6	63	401	184	539	47.83	5e-94	341

Ortholog group

Species	Genes
Allium cepa	g495157.t1
Allium fistulosum	AfisC1G02526
Allium sativum	Asa7G02446.1
Arabidopsis thaliana	AT2G34650.1
Oryza sativa	LOC_Os03g44020.1; LOC_Os12g42020.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	64	227	124.9	3.3e-36
PF00069.22	Pkinase	Domain	267	371	60.9	1.1e-16

Gene Ontology

Accession	Ontology	Name
GO:0000155	F	phosphorelay sensor kinase activity
GO:0000160	P	phosphorelay signal transduction system
GO:0004674	F	protein serine/threonine kinase activity
GO:0005198	F	structural molecule activity
GO:0005524	F	ATP binding
GO:0005730	C	nucleolus
GO:0005874	C	microtubule
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006468	P	protein phosphorylation
GO:0007018	P	microtubule-based movement
GO:0008728	F	GTP diphosphokinase activity
GO:0009507	C	chloroplast
GO:0009734	P	auxin-activated signaling pathway
GO:0009860	P	pollen tube growth
GO:0009882	F	blue light photoreceptor activity
GO:0009908	P	flower development
GO:0009925	C	basal plasma membrane
GO:0009958	P	positive gravitropism
GO:0009986	C	cell surface
GO:0010150	P	leaf senescence
GO:0010540	P	basipetal auxin transport
GO:0015970	P	guanosine tetraphosphate biosynthetic process
GO:0015979	P	photosynthesis
GO:0019901	F	protein kinase binding
GO:0048766	P	root hair initiation
GO:0048767	P	root hair elongation
GO:0048825	P	cotyledon development
GO:0080167	P	response to karrikin
GO:1901981	F	phosphatidylinositol phosphate binding
GO:2000012	P	regulation of auxin polar transport
GO:2000114	P	regulation of establishment of cell polarity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network