result

Gene information

Detail information of AfisC1G02602

Location

Gene	Chr	Start	End	Strand
AfisC1G02602	chr1	480457785	480459722	+

Sequences

CDS

>AfisC1G02602
ATGTCTCTACCTCCTGGATTTCGATTTCACCCAACTGATGATGAATTAGTAAATTATTATCTAAAAAGGAAAGTGGATGGATTAGCAATAGAGCTGGATGTGATCCCAGCCATTGATTTATACAAGTCTGATCCTTGGGAGTTGCCAGAAAAATCATTTCTTCCAAAAAGGGATATGGAGTGGTTTTTCTTCTGTCCAAGAGACAAGAAGTACCCAAATGGATCTAGAACTAATAGGGCCACCACATCTGGATACTGGAAAGCTACAGGTAAAGACCGCAAAGTCTTTTGCGAGTCTTTAGTTCAAGGACTCAGAAAAACTCTAGTGTTTTACCTTGGAAGAGCACCTGGTGGAGAAAGAACTGACTGGGTCATGCACGAGTATCGTCTTTGTGAAGATCTCTCTCAGCCCGTTCCTCATTTTTTGGGAGCATTTGCATTGTGCCGGGTGATGAAGAGAAATGAGCATGGTCTCAAAGTAGGAGAACCACTAGGAGAGTCTAAAGGAAAAAGAAGCTCCCCTCATGTATCAAGTGAATTTAGCCCTAGAAGAAAGTATGATAAAGGGATGAATAGCATAGAAGAATGCTCAAGTGGATCAAAATTCTTTGAAATTAACAATGGTACATTTGTAACTTCTCAAAGTGGGGTAATGGGAATGAATATGCCACCATTTAATATAGCAGAAACTAATCAGAGTTCAGAGAATTTTGTGTCTGAGCCTGTTCATTATCAACCTAATCACCCCAGTTCAGCAGAAGTATGCCAGTCAGATAGCAATTCTCGCGTAACGTCTTACACAAGCTTAACTAATGAAACTAACTACAGTGCAGAAGACTTCTCTACTCAAGGAATCTTTTCAAAAACTCCTAGTGGTATAGAAGTTGACAATACGAATATGTACCTCAACGAAGAAGATTTGGGACTTCAGAGTTTCGAATGGGACATGTCAGCAGCTTACACGAACACAAGTTCACTTGGTTTTGAAGCTTATAACATGCCATGGTATTCTTCAACACTATGCAGACAGGCAAGCGATGTTGATGAACTGAATTTGTGGTTGCAAGACGAAAACTTGACTGTTATGTGA

Protein

Gene

>AfisC1G02602
TTTTCTTTATTGTTTTTCAGTCAAGAACTGCAGGTTTTTTTTGCAGTATTCAGAACTTCCAGCTTTGTTTCTTCAAATTTTAGCGAAGATTATAAGTATTACAACTACGTGAACATCATTATTTATTTAGTTATATTGGTGGGTTTCAAAATTGAGGTTGATGATAAGAATGATTTTTCTGTCCACTGTATACATCATCTGCAAATTTACTTCGGTGTTTGAGAAATTTCGCTTTGAGAAGAGTTTCTACTTTTGGATATTTCAAATATTCAATAGATACAACTTTGGAACATAACTTACTAGTTCTGTACTCAAATTAAGTATCTATATATTTTTCCTTTTTCTCCTCGCCGTTTATGTAAAATTTGAACTTATTGTATTGTAACTATATCCCTTCATTTCGAATTCGAATCAATCCAAATATTAAAGGATAGGTTCAATGTCTCTACCTCCTGGATTTCGATTTCACCCAACTGATGATGAATTAGTAAATTATTATCTAAAAAGGAAAGTGGATGGATTAGCAATAGAGCTGGATGTGATCCCAGCCATTGATTTATACAAGTCTGATCCTTGGGAGTTGCCAGGTAAAATAAAGACATTTATGTTTCATAATATCAGTTCCATTGTTGTTCTTTATATTATTTTAAATCTTTTTAAAAATGCAGAAAAATCATTTCTTCCAAAAAGGGATATGGAGTGGTTTTTCTTCTGTCCAAGAGACAAGAAGTACCCAAATGGATCTAGAACTAATAGGGCCACCACATCTGGATACTGGAAAGCTACAGGTAAAGACCGCAAAGTCTTTTGCGAGTCTTTAGTTCAAGGACTCAGAAAAACTCTAGTGTTTTACCTTGGAAGAGCACCTGGTGGAGAAAGAACTGACTGGGTCATGCACGAGTATCGTCTTTGTGAAGATCTCTCTCAGCCCGTTCCTCATTTTTTGGTCAGTCTGCCCTAAAATATCATCGTTTTTATTTACATTGCACTTGCACCTTTAATTTGGCATTTCGTACTTTGATCAGAACAACTACCTTTTAAGGTATGACTGTTTTTAAAGGTTGCTATTGTTGTAGTATTGATTAATTATTATGTATATATATAAATAGGGAGCATTTGCATTGTGCCGGGTGATGAAGAGAAATGAGCATGGTCTCAAAGTAGGAGAACCACTAGGAGAGTCTAAAGGAAAAAGAAGCTCCCCTCATGTATCAAGTGAATTTAGCCCTAGAAGAAAGTATGATAAAGGGATGAATAGCATAGAAGAATGCTCAAGTGGATCAAAATTCTTTGAAATTAACAATGGTACATTTGTAACTTCTCAAAGTGGGGTAATGGGAATGAATATGCCACCATTTAATATAGCAGAAACTAATCAGAGTTCAGAGAATTTTGTGTCTGAGCCTGTTCATTATCAACCTAATCACCCCAGTTCAGCAGAAGTATGCCAGTCAGATAGCAATTCTCGCGTAACGTCTTACACAAGCTTAACTAATGAAACTAACTACAGTGCAGAAGACTTCTCTACTCAAGGAATCTTTTCAAAAACTCCTAGTGGTATAGAAGTTGACAATACGAATATGTACCTCAACGAAGAAGATTTGGGACTTCAGAGTTTCGAATGGGACATGTCAGCAGCTTACACGAACACAAGTTCACTTGGTTTTGAAGCTTATAACATGCCATGGTATTCTTCAACACTATGCAGACAGGCAAGCGATGTTGATGAACTGAATTTGTGGTTGCAAGACGAAAACTTGACTGTTATGTGAAAGACCTCGGAGGTGCGCCTTTTATGATTAGCCTGGGGAACAATATACTATATGGATAAATAATAAGTATGTGCTAATAATATATGTATTGTCCATATTTGGTATGAGAATATATAATGTGTGTGTAAGATTATGTTATGTGAACATGACTATTGTTGTTGAGATA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020259502.1	3.8e-110	NAC domain-containing protein 86-like
Swissprot	O49697.1	3.5e-68	NAC domain-containing protein 71
trEMBL	A0A5P1F1I3	2.8e-110	NAC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G17980.1	74.52	5e-68	254	anac071;NAC071	NAC domain containing protein 71

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G02602	AT4G17980.1	157	36	2	3	155	6	162	74.52	5e-68	254
AfisC1G02602	AT1G32510.1	185	47	3	3	179	6	182	65.95	1e-64	243
AfisC1G02602	AT5G46590.1	155	43	2	3	155	6	160	70.97	4e-63	238

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC1G02602
Allium sativum	Asa7G02404.1
Arabidopsis thaliana
Oryza sativa	LOC_Os10g42130.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	4	130	101.0	4.5e-29

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005516	F	calmodulin binding
GO:0005730	C	nucleolus
GO:0005789	C	endoplasmic reticulum membrane
GO:0008283	P	cell proliferation
GO:0009531	C	secondary cell wall
GO:0009555	P	pollen development
GO:0009620	P	response to fungus
GO:0009819	P	drought recovery
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009741	P	response to brassinosteroid
GO:0010029	P	regulation of seed germination
GO:0010200	P	response to chitin
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010981	P	regulation of cell wall macromolecule metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0045491	P	xylan metabolic process
GO:0046982	F	protein heterodimerization activity
GO:0048527	P	lateral root development
GO:0048759	P	xylem vessel member cell differentiation
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0070301	P	cellular response to hydrogen peroxide
GO:0071365	P	cellular response to auxin stimulus
GO:0071470	P	cellular response to osmotic stress
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0090058	P	metaxylem development
GO:0090400	P	stress-induced premature senescence
GO:0090602	P	sieve element enucleation
GO:1900057	P	positive regulation of leaf senescence
GO:1900426	P	positive regulation of defense response to bacterium
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1902074	P	response to salt
GO:1904250	P	positive regulation of age-related resistance
GO:1990110	P	callus formation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network