result

Gene information

Detail information of AfisC1G02667

Location

Gene	Chr	Start	End	Strand
AfisC1G02667	chr1	492649478	492653388	-

Sequences

CDS

>AfisC1G02667
ATGGGGTTGTGTTATGGGAAAGAAGTAAAGAAGACCCCAATTCAAGTAGAGGATTCTAAGATAAACTACAAAGAGAAAGACACTTCACCAAAGCCCGAAACATGGAAAACAAGGAAATACTCATTGTACATGCCTAGTCCCTTGCCAAGCTTTTACAAAAACTCGCCTCTTAGTTCTAGTTTGACTTCACCTCCTTCGAGAATTCTAAAAAAAGCATTTCCACCTCCTTCACCAGCAAAGCACATTAAGTCCTTTCTTGCTAGGAGACATGTATCATTGAAGTCTAGCAAATCGACTATAGACGAAGGGAGGGAGGATGATCTACTTTTGAGTAAGAACTTCGGTTATTTGAAGGATTTGCATTCTAACTATGAGCTTGGTGATGTTGTTGGTCAAGGGCATTTTGGGTATACTTGTTCTGCGAAGATGAAGAAAGGAGAGGAAGTGGCTGTTAAAGTCATCCCCAAAGGAAAGTTGTCAACGGTAGTTGCAGTCGAAGACGTGCAAAGGGAAGTGAAAATATTGAGTTCCCTCTCTAGACACAAAAACCTTGTGCAGTTCTATGATGCTTATGAGGATGATGAAAATGTTTATATAGTAATGGAATTGTGCAAAGGTGGAGAACTCTTGGAAAGGATTCTTACAAGAGGTGGAAAATATTCAGAAGATGATGCAAAACATATAATTATCCAAGTTTTGGGCGTTGTTGCCTCTTTCCATCTTCAAGGTGTTGTGCATAGAGATCTCAAGCCAGAGAATTTTTTGTTTGTTTCTGAGGATGAAAAATCTAGTATCAAGGCTATAGATTTTGGCTTATCAGATTTTTTGAATCCTGGTACACTTCTTCACATTTTTTCCAGTTCTTTCGTGTTTGATCATATATCACTGCTTCTACATATATTTTGTAAAATAAATAAAGCAGATGACAGGCTAAATGACATAGTAGGAAGTGCATATTATGTAGCTCCAGAAGTATTGCATAGATCATATGGCAGTGAAGCAGACATATGGAGCATTGGTGTAATTGCATATATTCTTCTTTGTGGTAGCCGACCTTTCTGGGCAAGAACAGAATCTGGCATATTCCGCTCTGTCTTAAAAGCAATCCCAAATTTTGAAGACGATCCTTGGCCTTCATTGACTTCTGAGGCCAAAGACTTCATAGTGAAATTGCTTGACAAAGATTACAGAAGGAGATTGACTGCTTCACAAGCTCTGAGTCATCCTTGGCTTCGCAACTGTAAAGATGCTAAAATATGTTTAGATATTTCGATTATAAGGTTTGTTAGAGCCTATATTTGTTCTTCATCCCTGAGGAAATCGGCTTTGAGGGCTCTTGCTAAGACTTTGACAGTAGAAGAATTATTTTATCTCAGAGAGCAATTTTCATTGCTCAACCCAAGCAAAAATGGATTTATTTCCATCCAAAATTTCAAGAAGGCATTGTTGAAGTACTCAACAAAGGCAATGGAGTTATCAAGGGTCCATGATTCTGTGGAATTGATAAGTTCACTTCAGCACAAAAAGTTGGATTTCGAAGAATTTGTTGCTGCTGCATCAAACGTATATCAACTAGAAGGCTTGGATTGCTGGGAGCAGCGTGCACACAATGCATATGCATATTTCGACAAGGATGGGAATAAGCAAATTATGATTCAAGAACTTGCATCTGAACTGGGGCTTGGTCTATCAGTCCCCATTCACATTGTGATCCAAGAACATATACGCCATACTGATGGCAAACTTAGCTTTGTTGGATTCATGAATTTACTTCGAGGAGTGCCTTCAAGTTCCATATCCAAATTAGTATAA

Protein

Gene

>AfisC1G02667
CGAAAGCTCCACTTAAAACATTCTTTAGAGAAAAGGTTGATCAAAAGGAAACTATAAAACATACAATGCAAGCAAAAAGCTGTTCCTTTCATTCCTACTCCAATTTTTTCTTATCTACTTTCAATATCTTCACTTCATATTTGATGATAATCTCATCATTGGGCTAAGAATCTCTTCAATCATTATGTCATCCTAGAGTTTACTTTCTTTTCTTGATCCATATATGGAAAGCTAACACAAGTATTCTTACTGCAATATTTCTTTCTAAAGGATTTCTCAATGGGGTTGTGTTATGGGAAAGAAGTAAAGAAGACCCCAATTCAAGTAGAGGATTCTAAGATAAACTACAAAGAGAAAGACACTTCACCAAAGCCCGAAACATGGAAAACAAGGAAATACTCATTGTACATGCCTAGTCCCTTGCCAAGCTTTTACAAAAACTCGCCTCTTAGTTCTAGTTTGACTTCACCTCCTTCGAGAATTCTAAAAAAAGCATTTCCACCTCCTTCACCAGCAAAGCACATTAAGTCCTTTCTTGCTAGGAGACATGTATCATTGAAGTCTAGCAAATCGACTATAGACGAAGGGAGGGAGGATGATCTACTTTTGAGTAAGAACTTCGGTTATTTGAAGGATTTGCATTCTAACTATGAGCTTGGTGATGTTGTTGGTCAAGGGCATTTTGGGTATACTTGTTCTGCGAAGATGAAGAAAGGAGAGGAAGTGGCTGTTAAAGTCATCCCCAAAGGAAAGGTGGTTATTATATTTTGATGATTTTCATCGTAATCCTGTTAAGTAATTTTCATCCAAAAAATACATAACTGTTGGTATGAATATTGTGTAAATATCTGATATTCATGGAAGTATAGAAACCTAGTCGGTAAGGTATTAGCGGTACTTTTGCATTAAAAATTTAGTAGTGTGTGTACATGCACAGAGCAATTTGTTGACGGATTCTCTAATTGCGATATACCTTTTGTGTTCTTTAGCTACTTTTTTAATTTTAATTTTTGCCTTATTCTTTACCTACTCTGATATATTCTGTTACAGTAGTTAATGGACAATTTTCTCTTCTCTCTTATTCTATTTAATATAACTTTTCATTAGGAGTGTATAGTATAATGGTATTCGCTTTTGTGGAGTAGAATAGATGCAAAACTTATCCACTAGGTCGTATATAATAGAAGCAACCGTTGCAGTTGAATGCATGTTGGTACAAACTTTTTTGTTGCCTAATTCTTTGGAATCAGTATTTGATTGAACAATCAACAAAGCCTTGGTAAAAGGTTTATCAATGTATAGAGTCTTCGAATTATTTGCAATAACAATGGATACAATGCCTAACTTGCATAATAATATTTCTAATTTCATCTGCTATATTTTCTTACTATTTCAAACAGTATGTGTTAAATAGTGTGAAAATGCTATATTTTCACTGCAGTTGTCAACGGTAGTTGCAGTCGAAGACGTGCAAAGGGAAGTGAAAATATTGAGTTCCCTCTCTAGACACAAAAACCTTGTGCAGTTCTATGATGCTTATGAGGATGATGAAAATGTTTATATAGTAATGGAGTAAGAACACTCATACCTTCAGTTAATTATCTTCTAATCCAGATACAATAGGCATATGCAAGTTATTCTTGCATAGTTGAGCTAGAAATACATATGGATGCTTATGTTACTCTGTTTTATCAGATTGTGCAAAGGTGGAGAACTCTTGGAAAGGATTCTTACAAGGTGCGCGTATCAGGATGTTATTCAGATACACTGTAAAAATTACATATACATATTGATAAAATGTGCCTATACAATTTGTGTATATATAGAGGTGGAAAATATTCAGAAGATGATGCAAAACATATAATTATCCAAGTTTTGGGCGTTGTTGCCTCTTTCCATCTTCAAGGTGTTGTGCATAGAGATCTCAAGCCAGAGGTTACTATAAAATTCATCCATGTTACCTTATCATTTATATTTTATAAGCTATTTATTAGTGTACACTGAAAATATTATATTATTTGATATGTGCTTCAGAATTTTTTGTTTGTTTCTGAGGATGAAAAATCTAGTATCAAGGCTATAGATTTTGGCTTATCAGATTTTTTGAATCCTGGTACACTTCTTCACATTTTTTCCAGTTCTTTCGTGTTTGATCATATATCACTGCTTCTACATATATTTTGTAAAATAAATAAAGCAGATGACAGGCTAAATGACATAGTAGGAAGTGCATATTATGTAGCTCCAGAAGTATTGCATAGATCATATGGCAGTGAAGCAGACATATGGAGCATTGGTGTAATTGCATATATTCTTCTTTGTGGTAGCCGACCTTTCTGGGCAAGAACAGAATCTGGCATATTCCGCTCTGTCTTAAAAGCAATCCCAAATTTTGAAGACGATCCTTGGCCTTCATTGACTTCTGAGGCCAAAGACTTCATAGTGAAATTGCTTGACAAAGATTACAGAAGGAGATTGACTGCTTCACAAGCTCTGAGTAAGTCGATCAATTTCCCATATAATAATGTCATATCATGCCTGTTTAAGTACATCAGTTCGTTAAGAGTTTCTATGGAAAATGTAAGTTTGTATATCTTTATTTCTTTGAAGTACTAAACAAACAACAATGGTATCTGATCTGCAGGTCATCCTTGGCTTCGCAACTGTAAAGATGCTAAAATATGTTTAGATATTTCGATTATAAGGTTTGTTAGAGCCTATATTTGTTCTTCATCCCTGAGGAAATCGGCTTTGAGGGTATATTCTATATCTCCTTCTCTTCCTTGATTAATCCAATTACTAAGACATCATTGTAACTTTCCATTGACTTCACTAGTATATAGTATTATGCATGTGTGTTTGCAGTGTCTTGAAAACTTCATATATACGTAGACTTGAACTTGAAACGGATACTTGAGCTTTTTAATGGAATGAAAAGATGAATAATAAACAGTTCTATACTTGCATTTAAGTAATTTCCACTGCAGGCTCTTGCTAAGACTTTGACAGTAGAAGAATTATTTTATCTCAGAGAGCAATTTTCATTGCTCAACCCAAGCAAAAATGGATTTATTTCCATCCAAAATTTCAAGAAGGTTAGTACCATACTTCCATTTAAGTAATCCATGGCAAAACAAAATAAGACTCAGATGCAATGTGTGCAACACGGAATACATACAGGCATTGTTGAAGTACTCAACAAAGGCAATGGAGTTATCAAGGGTCCATGATTCTGTGGAATTGGTGAGTAACAGTCCCTGAATAAAGTGCCTTAAATGTATATTTCAGTTTTAGTACTAAAAACTAATCAACTAAAGCATTTAAACAGATAAGTTCACTTCAGCACAAAAAGTTGGATTTCGAAGAATTTGTTGCTGCTGCATCAAACGTATATCAACTAGAAGGCTTGGATTGCTGGGAGCAGCGTGCACACAATGCATATGCATATTTCGACAAGGATGGGAATAAGCAAATTATGATTCAAGAACTTGCATCTGTATGTTTCATATATTTTGAATAACATTCCTACATTTTAATTTATTTGTATATTCTGCAAAGTATAAGTTAAGTCTATTTTGGAACTAACCATTACCAGATTAATAACTTCTAAAGTAAAATGCAGGAACTGGGGCTTGGTCTATCAGTCCCCATTCACATTGTGATCCAAGAACATATACGCCATACTGATGGCAAACTTAGCTTTGTTGGATTCATGAATTTACTTCGAGGAGTGCCTTCAAGTTCCATATCCAAATTAGTATAAATGTGGTATCATAAGGTGGTTAGCATTTTACCATCTTTTTTTCTTACCCATGTTACCTTTTGTATTAACTTTAATTAAGCAAGCACTCTGTTATATGTACAACTTTGTTGTTGTCACTTAATTCAGATTAATTCCTGCTTGTTATACT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010907987.1	1.5e-220	calcium/calmodulin-dependent serine/threonine-protein kinase 1
Swissprot	O80673.1	5.8e-209	Calmodulin-binding protein kinase 3
trEMBL	A0A6I9QEV5	1.1e-220	calcium/calmodulin-dependent serine/threonine-protein kinase 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G41140.1	61.64	0.0	739	ATCBK3;ATCRK1;CRK1	CDPK-related kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
AfisC1G02667	AT2G41140.1	610	190	6	1	601	1	575	61.64	739
AfisC1G02667	AT3G56760.1	611	195	6	1	601	1	576	60.72	725
AfisC1G02667	AT3G50530.2	586	216	5	28	599	44	629	60.75	724

Ortholog group

Species	Genes
Allium cepa	g167987.t1
Allium fistulosum	AfisC1G02667
Allium sativum	Asa7G02296.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	124	411	217.1	2.5e-64

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000166	F	nucleotide binding
GO:0005509	F	calcium ion binding
GO:0051015	F	actin filament binding
GO:0006952	P	defense response
GO:0005576	C	extracellular region
GO:0004683	F	calmodulin-dependent protein kinase activity
GO:0004702	F	receptor signaling protein serine/threonine kinase activity
GO:0004723	F	calcium-dependent protein serine/threonine phosphatase activity
GO:0035556	P	intracellular signal transduction
GO:0005516	F	calmodulin binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005885	C	Arp2/3 protein complex
GO:0009506	C	plasmodesma
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009825	P	multidimensional cell growth
GO:0009931	F	calcium-dependent protein serine/threonine kinase activity
GO:0010090	P	trichome morphogenesis
GO:0010150	P	leaf senescence
GO:0010286	P	heat acclimation
GO:0018105	P	peptidyl-serine phosphorylation
GO:0034314	P	Arp2/3 complex-mediated actin nucleation
GO:0046777	P	protein autophosphorylation
GO:0080092	P	regulation of pollen tube growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13412	CPK; calcium-dependent protein kinase	EC:2.7.11.1	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network