result

Gene information

Detail information of AfisC1G02938

Location

Gene	Chr	Start	End	Strand
AfisC1G02938	chr1	540563979	540566988	-

Sequences

CDS

>AfisC1G02938
ATGTCTTCCTTCTTGATTATGTCATTGGCCTTCTTTCTCTTCATCTACATTGTAATTTCAACGATATCTGCACAATTTAAATCACCTTCATCCAAACTTGTATATCACCCTATTATAGGAAATTTCATATCTTTCTACAAAAATCAATACCGCCTTGTAGATTGGTATaCGCACCTACTATCGAACTCTCCTACCCAAACCATCACAATATCAAGGATAGGTGCACGCCGCACTGTAGTAACTACAAATCCTAAAAATGTGGAGCATATTCTGAAAACAAACTTCCAAAACTACCCCAAGGGTAAACCATTCACCGACATTCTCGGCGACCTTCTTGGTTCGGGTATTTTCAACACGGATGGAGATTTGTGGCTCGAGCAACGTAAACTTGCTAGCCATGAATTTAGCGCGAGGTCGTTGAGGGAGCTTGTTTATGTTAAGATTGTGAAAGTGGTCAAGGAGAGACTTTTGCCTTTTCTAGAAGGCAAATGCAAAGATGGGAAGGAGTTTGATTTGCAAGAAGTGTTTAGGAGGTTCGCCTTTGATGTCATTTGTAGCATCTCCATGGGTTATGATTTTGGCTTGCTTGATCCTCTCAAGCCAATGGATTCTCATGATCTACCATTCGCAAAGGCATTTGACATAGCATCAGCAGTCAGCGCAAGACGGGGAGCTGCACCAATATCAGCAATATGGAAAATAAAGCGAGCCCTAAAAGTGGGATCAGAACACAAACTCCACATGGCCGTAACACAAATCAATGAAACGATCAGCACCATAATCGAACAAAGAAAACTTGAACTACTCGAAGAAGACGAAAACTCCAGCAAAAACGACCTCCTGTCGAAGTTGATCAAAAGCAAGCACTCAGATAAGCAAATACGGGACATGGTGATAAGTTTCATAATGGCAGGACGGGACACAACGTCCTCCGCCCTAACATGGTTCTTCTACCTGCTCAGCCTGCACCCAGCCATCGAGAATGAAGTGCTGGAAGAAGTAATGAAGAAGCACAAAGACTATGAGAGTTTGAAGGAGATGAAGTATGTGGAGGCGTGTCTGTACGAGAGCATGAGGCTGTACCCGCCAGTGGTGTGGGACTCGAAGCACGCGGAGAGGGAAGATGTGCTGCCTGATGGGACAGAGGTGGGGAAAGGGGACAGGGTGACCTACTTCCAGTATGGGATGGGGAGGATGGAGAGGATATGGGGCAAGGATTGCAACGAGTTCAGGCCAAGGAGGTGGTTGTTGAAGGAGGACGATGGGAAGGATCAGATAGTGAAGGTGTCCGCGTACGAGTATGCGGTGTTCCAAGCGGGGCCGAGGGTGTGTTTGGGTAAGGACATGGCCATGATGGAGATGAGATACGTCGTGGCAAAGGTGTTGGAGGAGTATGTGGTCAGGAGGGTGGGTGATGCGGGTGCTGTTCCGGTTATGGTTCCATTACTGACTGCGCATATGGCGGGTGGGTTGAATGTTGTGGTGGCCAGGAGGAAGTCTTAA

Protein

Gene

>AfisC1G02938
AAGGAAGAAACGTGCAGAAATTGGTTACCAGTCTTACATATATCTAAACTAATAAAAACCGACATGAACACAATGGACCTAAGAAAAGGTCTACCCAGAAATACAAACCAACAATTAAAAAGAATTTCCAAACCCCTATCAACTATATCTAATCCTTAACAGCAACAACTGTTGACTATATTAATATATATCACCTCTCTTGTACCACATATGCAAGCCATCTTTAATTTCAAAACCTCTACTGTATTATACAAATATGTCTTCCTTCTTGATTATGTCATTGGCCTTCTTTCTCTTCATCTACATTGTAATTTCAACGATATCTGCACAATTTAAATCACCTTCATCCAAACTTGTATATCACCCTATTATAGGAAATTTCATATCTTTCTACAAAAATCAATACCGCCTTGTAGATTGGTATaCGCACCTACTATCGAACTCTCCTACCCAAACCATCACAATATCAAGGATAGGTGCACGCCGCACTGTAGTAACTACAAATCCTAAAAATGTGGAGCATATTCTGAAAACAAACTTCCAAAACTACCCCAAGGGTAAACCATTCACCGACATTCTCGGCGACCTTCTTGGTTCGGGTATTTTCAACACGGATGGAGATTTGTGGCTCGAGCAACGTAAACTTGCTAGCCATGAATTTAGCGCGAGGTCGTTGAGGGAGCTTGTTTATGTTAAGATTGTGAAAGTGGTCAAGGAGAGACTTTTGCCTTTTCTAGAAGGCAAATGCAAAGATGGGAAGGAGTTTGATTTGCAAGAAGTGTTTAGGAGGTTCGCCTTTGATGTCATTTGTAGCATCTCCATGGGTTATGATTTTGGCTTGCTTGATCCTCTCAAGCCAATGGATTCTCATGGTATGTCGTCTCTTTACTTCCATTTGCTGCATTTTATATGATAAACTCACTTTTCAATGCTCTAATGAGACAAAAGTTTCATTTTCTAGCATTTTTCAGTTATAATGTCGTGGTTCGTAAACTAATATATTTTAAAATATGGTGTAAGTTAACCAGCTTGGGATATGGCTCACATGTTGGATGTCCCCTATCCCAATCCACTCTTTGCCTTTCGTTTCGTTTCAAATATCTTGAATACCGCTTAATTGACTTAATAATGATAAATAATTAGTGGTCAATATATTACATGTGCCCATTTAGTTAAAAAAAATACTATTTTATCAACTGGATTTATAATTAAAGGGAATAATATAAGACAAATGAGTTGGATTTAATGGACAGCTGCACACAAAAGTTGAAAAACGGACGATCTTACAAGGTTATGATATAATTAGGCAAGAGTTACGAGTATTGAAAATCGTAACATAATGCTAAAGATATTTTTTTATTATTAAAATTATTGGTAAATAATTTGAAGTAACATCTAGACTAGGGAACTTAAATTAAAGTAGAGGGCAAAATTTCCATAAATTATCCACAAATATATTCGGCAGTTTTGTTCAAAATTATATTTAGTTCTGTTGTCATTTGGTTGTTTGTCTTTCTTATATATTTTACAAAATCTCCATTTATTTTAATTTTGCCTTAAACCATAGGTGCAAAAAAACTACTTGTTCTTTTTAACATAGTTTTGGTAAACAAGCTCTAAAGAATATACTTCTGTTTTAGCACATAAATATATTTTTATAGATCAGTAATCATGTATAAGAATTTAATTGACGTTGGTAACATGTTTGGTTCAAATTAAACATTGGAATTCCACCTTTTTCATATAAAAAATGTAGGTGATTAAATTTCAACTTTAGTACTTATTTTGGCAAAATTTGCAACAAATGGGGATGTTAATCTCATTATATTGTTTAGAACAATGGTGGTGTAATGCACGGAAAATATGTGATTTACATATAACATATTCTTGTGACATACAGATCTACCATTCGCAAAGGCATTTGACATAGCATCAGCAGTCAGCGCAAGACGGGGAGCTGCACCAATATCAGCAATATGGAAAATAAAGCGAGCCCTAAAAGTGGGATCAGAACACAAACTCCACATGGCCGTAACACAAATCAATGAAACGATCAGCACCATAATCGAACAAAGAAAACTTGAACTACTCGAAGAAGACGAAAACTCCAGCAAAAACGACCTCCTGTCGAAGTTGATCAAAAGCAAGCACTCAGATAAGCAAATACGGGACATGGTGATAAGTTTCATAATGGCAGGACGGGACACAACGTCCTCCGCCCTAACATGGTTCTTCTACCTGCTCAGCCTGCACCCAGCCATCGAGAATGAAGTGCTGGAAGAAGTAATGAAGAAGCACAAAGACTATGAGAGTTTGAAGGAGATGAAGTATGTGGAGGCGTGTCTGTACGAGAGCATGAGGCTGTACCCGCCAGTGGTGTGGGACTCGAAGCACGCGGAGAGGGAAGATGTGCTGCCTGATGGGACAGAGGTGGGGAAAGGGGACAGGGTGACCTACTTCCAGTATGGGATGGGGAGGATGGAGAGGATATGGGGCAAGGATTGCAACGAGTTCAGGCCAAGGAGGTGGTTGTTGAAGGAGGACGATGGGAAGGATCAGATAGTGAAGGTGTCCGCGTACGAGTATGCGGTGTTCCAAGCGGGGCCGAGGGTGTGTTTGGGTAAGGACATGGCCATGATGGAGATGAGATACGTCGTGGCAAAGGTGTTGGAGGAGTATGTGGTCAGGAGGGTGGGTGATGCGGGTGCTGTTCCGGTTATGGTTCCATTACTGACTGCGCATATGGCGGGTGGGTTGAATGTTGTGGTGGCCAGGAGGAAGTCTTAAAACAGTACATATATGGGATTCACTGTATATCTTCATTCTATTATTTTATTTTTTTAGGTATACTTTGTGTTTTGATTGTGATCTTAGGTGATATAGATTCTAATTAATAGTACTTATAATTAATATTGTTTGTTTGTTTGTTTAAATAGTTCAATGTTGTGGCCTACTTCTCTATTTTGACTGTATTTCAGAAAAAATTAGAAGAAAAAACCTTCTTTTAAAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010929779.1	1.7e-156	cytochrome P450 94B3
Swissprot	Q9FMV7.1	2.1e-140	Jasmonoyl-L-amino acid 12-hydroxylase
trEMBL	A0A6I9RPG7	1.2e-156	cytochrome P450 94B3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G63450.1	51.61	1e-143	506	CYP94B1	cytochrome P450, family 94, subfamily B, polypeptide 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G02938	AT5G63450.1	496	228	6	9	499	15	503	51.61	1e-143	506
AfisC1G02938	AT3G48520.1	507	221	7	3	498	6	499	51.68	8e-141	497
AfisC1G02938	AT3G01900.1	470	208	6	36	498	35	490	51.28	1e-137	486

Ortholog group

Species	Genes
Allium cepa	g365532.t1
Allium fistulosum	AfisC1G02938
Allium sativum	Asa7G05782.1
Arabidopsis thaliana	AT3G01900.1; AT3G48520.1; AT5G63450.1
Oryza sativa	LOC_Os11g29290.1; LOC_Os12g25660.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00067.19	p450	Domain	36	467	239.1	7.7e-71

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0002213	P	defense response to insect
GO:0016020	C	membrane
GO:0005783	C	endoplasmic reticulum
GO:0055114	P	oxidation-reduction process
GO:0009507	C	chloroplast
GO:0009611	P	response to wounding
GO:0009694	P	jasmonic acid metabolic process
GO:0010154	P	fruit development
GO:0010345	P	suberin biosynthetic process
GO:0010584	P	pollen exine formation
GO:0019825	F	oxygen binding
GO:0016709	F	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
GO:0018685	F	alkane 1-monooxygenase activity
GO:0035336	P	long-chain fatty-acyl-CoA metabolic process
GO:0042761	P	very long-chain fatty acid biosynthetic process
GO:0048480	P	stigma development
GO:0048653	P	anther development
GO:0052694	F	jasmonoyl-isoleucine-12-hydroxylase activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20665	CYP94B; jasmonoyl-L-amino acid 12-hydroxylase	EC:1.14.14.48	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network