result

Gene information

Detail information of AfisC1G03053

Location

Gene	Chr	Start	End	Strand
AfisC1G03053	chr1	564552707	564554876	+

Sequences

CDS

>AfisC1G03053
ATGAAACAAACAAAACACACCTTCATCGTCTTCATCATTTTCCTAAACTTAAAACTCAAAGCTCAACAAAACTACTCAGGCAATGAAGTGTTGGACTGCAGCCATACAAAAACAGCTCCTCCATCTCCGTCATATCTATACACATGCAACAGCACTACTCACTCTTGCCAATCTTTCCTCATCTTCAAATCTCAACCAAACTACAACACTATCAACACCATATCACAACTCTTCTCTGCAAGCTCCATACGTCTATCTCATATCAACAACATATCAAATTCAGATCAAATATTTCCTATAAATAAAGAACTTATCATCCCTACCACATGCTCATGTTTAGACAAATACTACCAAGCAAACACATCTTATGTCATAAGCGACAATGATACATACTTTTCTTTGGCCACTGCACAATACCAAGGTTTGAGTTCATGCAATGCTCTACTAGGAGAGAACCCCTATAGAGCAGAGAATTTGCTAAGCGGTATGAATCTTTCTGTCCCTCTTCGATGTGCTTGTCCTACTCAAAAACAGACATCGGATGGTACTAAGTTTCTATTGACTTATTCTCTTAATGAAAATGATAGCCTTCCTGATATTAGTATGAGGTTTGATGTCGATGTAAATAAAACTTCCTTTGCTAATGGGTTTAGTGAAGTGGATCCTCTTGTTTTTCCCTTGACTACTATTTTGATACCCTTGTCTAAAGAGCCCTTAAGCTCCCAGACTATAGTTGTTCAACCTATTGAATATCCTAGTCAACCCCATACTCCTTTGGCTGTTGTACATCTAACCAAGAAGAAAACATCGAAGCTGATATATCTTGCTGTTGCAGGAATTGTATCGGTTGTTCTTGTGTTGTTTATTTTCATATTTTTGTTATGGCTAAGAAAACAAAGGGTCAAAAGAGAGGAACGGAGTAAGAAATCAGAAGAGTTATCAAAAGCCTTTTTCAAAGCAGTGTCAAGAATAGATCAAGCCTTAAAAGTATACTCTATAGAAGACTTAAAAGCTGCAACAAAAGACTTCAGCTCAGAAAGCAAGATTCAGGGGTCGGTTTACAGGGGATACATTCATAAAAAGGCGATAGCTATCAAGAAAGTGGAGAAAGACGTATCGAAAGAAGCTAACATTCTATACAGACTCAACCACTTCAACCTAATAAGCCTATTTGGAATCTGCAAAGTAGAAGAATCGCATTCCTACTTACTCTACGAATACATGGAAAATCAATCCTTAAAAAACTGGCTTCAAAACCCAAATCTCTCTGGCCACTGGATGTGGACCAGAAGAGTGCAGATCGCCATAGACATTGCTAACGGGCTCGACTACATCCACAATTTCACCTACCCACCATTCGTGCACATGGACATTAAAACAAGCAACATACTTCTAAATGAAAAGTTCAGAGCAAAGATATCAAATTTTTCTATAGCAAGAAGCACAGAGAGGATGTCTACGAAGAATAGAGATGGGACGTTCGGGTATTTAGCACCCGAGTATTTGGATTCGGGTATCATAAGCCCGAAACTGGATGTGTATGCATTTGGGGTGGTGATGGCGGAGTTGATAACGGGTAGAGAGATATCGAATGAACGTAATGGGAGGATGGAATGGTTGTTTGAGTCCATTGTGTGTATGGTGGAAGGAGAGGCCCCGGAGAAGGAGGTAATGGAATTCATGGAAGAGAGTGTGAGGAGTGTGAGTCCTATTGGGCTTGTGATGGAAGTGGCTAAGCTATGTGTTGCTTGTTTTGTTGTGAATGTGGAGAGGAGGCCTAGTATGAATGAGGTGGTGAGGGTTCTTTCTAGGATACAAGTTGATTCACAAATGTGGGCTTTGGCATATCGATAA

Protein

Gene

>AfisC1G03053
ATTATCAACCCTTCTAACACTTAATTCCCTCAACTTTCCTTTATTATTCTTCTTAAAAGTAATCCTTCAAACCAGTAATGAAACAAACAAAACACACCTTCATCGTCTTCATCATTTTCCTAAACTTAAAACTCAAAGCTCAACAAAACTACTCAGGCAATGAAGTGTTGGACTGCAGCCATACAAAAACAGCTCCTCCATCTCCGTCATATCTATACACATGCAACAGCACTACTCACTCTTGCCAATCTTTCCTCATCTTCAAATCTCAACCAAACTACAACACTATCAACACCATATCACAACTCTTCTCTGCAAGCTCCATACGTCTATCTCATATCAACAACATATCAAATTCAGATCAAATATTTCCTATAAATAAAGAACTTATCATCCCTACCACATGCTCATGTTTAGACAAATACTACCAAGCAAACACATCTTATGTCATAAGCGACAATGATACATACTTTTCTTTGGCCACTGCACAATACCAAGGTTTGAGTTCATGCAATGCTCTACTAGGAGAGAACCCCTATAGAGCAGAGAATTTGCTAAGCGGTATGAATCTTTCTGTCCCTCTTCGATGTGCTTGTCCTACTCAAAAACAGACATCGGATGGTACTAAGTTTCTATTGACTTATTCTCTTAATGAAAATGATAGCCTTCCTGATATTAGTATGAGGTTTGATGTCGATGTAAATAAAACTTCCTTTGCTAATGGGTTTAGTGAAGTGGATCCTCTTGTTTTTCCCTTGACTACTATTTTGATACCCTTGTCTAAAGAGCCCTTAAGCTCCCAGACTATAGTTGTTCAACCTATTGAATATCCTAGTCAACCCCATACTCCTTTGGCTGTTGTACATCTAACCAAGAAGAAAACATCGAAGCTGATATATCTTGCTGTTGCAGGAATTGTATCGGTTGTTCTTGTGTTGTTTATTTTCATATTTTTGTTATGGCTAAGAAAACAAAGGGTCAAAAGAGAGGAACGGAGTAAGAAATCAGAAGAGTTATCAAAAGCCTTTTTCAAAGCAGTGTCAAGAATAGATCAAGCCTTAAAAGTATACTCTATAGAAGACTTAAAAGCTGCAACAAAAGACTTCAGCTCAGAAAGCAAGATTCAGGGGTCGGTTTACAGGGGATACATTCATAAAAAGGCGATAGCTATCAAGAAAGTGGAGAAAGACGTATCGAAAGAAGCTAACATTCTATACAGACTCAACCACTTCAACCTAATAAGCCTATTTGGAATCTGCAAAGTAGAAGAATCGCATTCCTACTTACTCTACGAATACATGGAAAATCAATCCTTAAAAAACTGGCTTCAAAACCCAAATCTCTCTGGCCACTGGATGTGGACCAGAAGAGTGCAGATCGCCATAGACATTGCTAACGGGCTCGACTACATCCACAATTTCACCTACCCACCATTCGTGCACATGGACATTAAAACAAGCAACATACTTCTAAATGAAAAGTTCAGAGCAAAGATATCAAATTTTTCTATAGCAAGAAGCACAGAGAGGATGTCTACGAAGAATAGAGATGGGACGTTCGGGTATTTAGCACCCGAGTATTTGGATTCGGGTATCATAAGCCCGAAACTGGATGTGTATGCATTTGGGGTGGTGATGGCGGAGTTGATAACGGGTAGAGAGATATCGAATGAACGTAATGGGAGGATGGAATGGTTGTTTGAGTCCATTGTGTGTATGGTGGAAGGAGAGGCCCCGGAGAAGGAGGTAATGGAATTCATGGAAGAGAGTGTGAGGAGTGTGAGTCCTATTGGGCTTGTGATGGAAGTGGCTAAGCTATGTGTTGCTTGTTTTGTTGTGAATGTGGAGAGGAGGCCTAGTATGAATGAGGTGGTGAGGGTTCTTTCTAGGATACAAGTTGATTCACAAATGTGGGCTTTGGCATATCGATAACTTAGTACTTCTTTTAGTAAGACGAGATGCATTTTGGTTGGGATTTAGTGGGTGATAGAAACACTTTATGTTATATATACGTGATACTAGCAAATTAGGACTGTGTTCATGAATATAGGTCATGATCTTCGTGTGCATATCATTTTTTTTTCTTCATTAATAGTTTACCGGTAGAATGGAAGAACATGTGCATTAGTGCATAAGCACCTTGTTAAGTAAATGATTTCTTCTTGTAATAG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK60171.1	1.4e-189	uncharacterized protein A4U43_C08F15130
Swissprot	O64825.1	6.0e-92	LysM domain receptor-like kinase 4
trEMBL	A0A200R7I5	1.7e-144	Protein kinase domain

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G23770.1	37.82	3e-104	376	LYK4	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G03053	AT2G23770.1	624	348	11	6	612	7	607	37.82	3e-104	376
AfisC1G03053	AT2G33580.1	650	376	16	7	612	12	650	33.69	5e-84	308
AfisC1G03053	AT3G21630.1	610	316	21	67	615	40	603	30.66	5e-56	216

Ortholog group

Species	Genes
Allium cepa	g85955.t1
Allium fistulosum	AfisC1G03053
Allium sativum	Asa7G05690.1; Asa7G05709.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	352	599	128.2	3.2e-37

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0050832	P	defense response to fungus
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006468	P	protein phosphorylation
GO:0008061	F	chitin binding
GO:0009409	P	response to cold
GO:0009506	C	plasmodesma
GO:0009737	P	response to abscisic acid
GO:0031347	P	regulation of defense response
GO:0043621	F	protein self-association
GO:0044444	C	cytoplasmic part
GO:0044446	C	intracellular organelle part
GO:0045087	P	innate immune response
GO:0048584	P	positive regulation of response to stimulus
GO:0071219	P	cellular response to molecule of bacterial origin
GO:0071323	P	cellular response to chitin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network