result

Gene information

Detail information of AfisC1G03118

Location

Gene	Chr	Start	End	Strand
AfisC1G03118	chr1	576199620	576205268	-

Sequences

CDS

Protein

Gene

>AfisC1G03118
ATGAGTTCTCCAGCAAATGATTTGTCTGGTACATTAAAGATTATCTTATGTGTTCATTTTTTGTGTTCCTTGTACCTTGTCGTAAAATTCTTCCTAAGAAGCATCTTGACCACATATATTTTATCCATGTATCTTCATTGGAGTGTGTGTGTGTGTGTGTGTGTGTATGTGGGTGTGGGCGTGAGCAAGGATTGGCTACACCTTATTATTGCCACACCTCTATTCCCCCAATTTCAACCACACATTCCGATTTAAATAATATAATGAGGTGGCAAGAGAGAAAAGGTATATTATTTAGACCGGAATGTCTGGTTGAAATCAGGGGATATATAGGTGTATGTGTGTGTGTATGTATAATGAGAGATATATAATGAGGTGGCAAGAGAGAGAAAGTATATTATTTAAACCGGAATGTCTGGTTGAAATCAAGGGATATGTACGTACGTATGTACCTATGTCTATATATATATATATATATATATATATATCCAACTGTTGAGCTTGAGGTTATTTGATGATTCTTGGCAGCAAATCTAAGTGTTTGTTAAAGAACAGTTTTGTGCTTTTCAGTTATAGAAGTATGATGACTTGATACCATAGGTGTTTATTAGTTTAAGACCTAAGAATGCTAATATGTATGTTACATGCTTTTAGCTGGGCTGTAGTACTAATGCATCTGTATTTGACAATGCTTCACTTTTTTTCTTCTTTTTCCACCTCTGTTCCATCTTTCTATTTCTTTCGTTCAACTATTATGTGCACCATTTTATTTTTTACTCTGGTCCAGATAGCCATGGCCCTGATGAGCAGGAAACAAATACCCAAGTCGAGACCCAAAATCAAATGCCAGCAAATGGAAATATTCATCCAGGCATGCCTGCTCCACCTGCTATGTACTTGATGCCACCTGTGCCTCCTCTTGAAGAAGGACATGGCATGGTGATATTTTGCATTGTTATATTCATATTGTTTGTGATGCTATTCACTTGTCTAAATATTAGTTTTAGTTCCTTATCTGAGTATGAAAATGGCTGCTGTATCTAAAACATCTGTATTGGCTTTTTGTGATGTGGTAATATGATTGGGGCTATTCTTAGGGTTCATTAGACCTTAATTCTTGCAATGATATTCAATTTTCTCTAGCCTTTGAAGTTTTCCAACTCTCCCTGAACTTGCATCTTTCCTTCTTGCATTTTTCCTTACTATTCTGAACCATTAGTGACATCAAGAACCTTTTTGCATTACCCATGCTTTCTGATAACTTTTTTGCTTGCTTAGTAAATACCTTCTATAAGCATCTATTATCCATATATTGTATTTCTCTGTTACTTCTTTCCTTTGATGGGTTAAAGTTGGGCTCATTCCCTTAGTTTAAGATTGACCAGTCAGCGACACAAATCAACAAGCACCAGTGGCGGAGCTAACCCATTATTTTAGCTAGGACCATATTATTATTATGTGTGCGTGTGTTTGTATATATGTATGTATGTATAATTATAATTGCTCACTAAAAAATAAGTTAAAAGCCGTTGGGCCTGAAGCTAGCCAAAAATATCTTCAGAAACTTAAATAAAAATGGGCCAAAGCTCTCTAACTTTCTTTTCAGGGAAAATAAATCAGCTAGGGCCTAAGATCAAATTCTAGTTTTCCGTACAAGTTTTCATTATTTCAACTAGGGCAGCTGCCCTTGCTGGCCCAACAGAAGCGCCGCCCTTGACAAACATATCTACATAAAATCTTCCATATCAAATGAGAGAAAATAAGAAACACACTTAGCCTAGTCACACTGTCTACGTAAGCTGTATATTCCTAATAGAGCTCTTCTTGCATTGAACAAAATAATAATAATAGATAGATATATCATATAATACTCATCAACACCATAGAATATGCACAAACAATGTGCTACATTCAAATAACTACGATCATAATTTCGGACGATGATTACACGAAAGACTATGCTGCTTCACCATCACCATAACTTTGAGATGCCATGATTCTTGAATTACCGATGCAATTGTCTACCCTATTTAAACTTTTTGAATAATTTGTTGGTTTTGTCATTTGTGTTGCATGGTTGTCCTTAAGATGGATACATAGTAAATTATTTTCATTTTTATATTGCACAGGATCTACCCATTGCTGTGATCATTGAAAATGACTGTAATCTTTAGTATCTACTTTTTATGTCCCTCAGCTGACTTGAAGATATATGGCAGGCTCCAGTGGCATACCCATATGTTGATCCATACTATGGAAGTATTATGGCTGCTTACGGCGGTCAAGCTATGGTGCACTCTCAAGATAATTTTTGGCTTGATTTAATTTATGAATGATTTCTTAAATCGGTAATATGCTTATTTATTTACTGTGACTTGATTCAGATGCCCCCTCATATGATGGGAGTGCTACCTCCTGGTGTGCCATTACCAACTGATTCAGTTGAGGAGCCTGTTTATGTGAATGCAAAGCAATATCATGGTATATTGAGGAGGCGTCAATCTCGTGCCAAAGCTGAATCAGAAAATAAACTCATTAAAAACCGCAAGGTAATTTCTCAATGTCCTGACTCCATCTGCTTATTCTGTTCCATTTTTATTACACATCGACACCAAAGGTGATAAGTATTCTTGTATTGTTACAACAGATTCCTCAGTTTTTTTGTCTTCAGACAATAAACTTGCAGCATATCAAGAAAATATTTTAGTACCTGTATTATTCATATCAGGCCTCAAAATTTGTCAATAATTATTGACCTCCATGCTTGTAGTTGCATTACTATGTCAAGCACTTCACTAAAATTCCAGTTGACTTTCTATTTGTTTACAAAATGAACTCATCTGGTAAGTAATCAGAACTTGTCAAAGAATCACATACATGAGTGTGTAAATTTAAGAAAACCACTAATGTACATGCAAAACCGTAAGTAATCTTTAAAAAGCTAATAACGAACCATTAGAATATGAAAATTATGGAAGTCGTGGTAGTGCTTAAATATTATGGTAAGATATTTTGAATTATTTGATTCTGTGATATGCTAAGTGCAATTCCAGTATGAAACTTGGAGGAAAAAAAAACCACAAGAACTCTTCTGTTGATATTGCTATTTGGGATGTGAATTGGATAACAAATCATGTTAAGAAAATTGATGTCTTCTTTAACCATTGCATTTAAAAATATTTTCGGATAAAAGCTTAGTTAAATTAGGTGAGCAGCCAAACAATCATAAAGAACGTTGGGCGCTCAACCTAAGAACGCTGCTAAGGGCACTTAACCTAAGAATGCTGCTACCGGCACTTAACCTAAGAACGCTGCTTAGGGCAATTAACCTAAGAACACTTCCAAGGGCACTTAACCTAAGAACACCTCTAAGGGCAATCAATCTTAGAATGCTGCTTAGGGCTTTACTTATTCAACCATCACATGATATGGTATCAGCAATGATGATGTTTAGTAATCATGATGATGCATAAGATTACAACCAGAGGTCAGGCCATGCTATGTGCATGATTCATTGCTGTTGCATCAGTCAGCGTAGTGTATCTCTGGAAAAATGATAGTGTTGTATCATTGGAGTGAAGGCAAGGAGCACGTGATTCCATTTTTCATGGTGCAATTTGGTATTATTGCATAAGGTAAATTTTGCATCTTCCTGAGTGTGAAGTGTAACAGTACTATAATCATTATTCAACAAGTTGTTCATTATTCTGGTAAAGGAGCCTTGATGGTGTTGGAGAGGATATTGTGTTTACACATTTAGTGGTAATGAAATGCAAAAGGAATGTTGCAAAAGGTGCACATTTTACATCAGATGGTGGCAACATGTTGATGTCATTTTTATAGAAGAAAATACATAAAAGTCATGCGCGGTGGTTTAATTGTATATGTACAAGGCCAACTGATGCTAGCTTTAATATGATTGCAGAGATCAAATGAAAGAGACTAAAGAGAACATATGCATGTATTATAATTGGTATGTTGGAGTGAGATATGAACGAGCAGATATGTGCTGAATTTTAAGATAGTGTGCTAAGATATCATGGTTAGGTATTTTGAATTATTTGATTTTGTGATATGCTAAATGCAATTCCAGTATGAAACTTGAAAAGAAAACCATAACACCCTTTTAACTTTGTTGATATTGCTACTTGGGCTGAGAATTGAATAAAAGATCATGTTAAGAAAATTGAACTGTCTTCTTTAACCATTGTGTATTGTTCTATGTAGTTGATTTGTGGTAAAATATTGGTGTTGTATTACTGGAGCGAAGGTAATAAGGGGTTCTTTTGTCGTACAATTCAATATCAATTCATAAGTTAATTGTTGCATCTTCCTGAGCCTGACGTAGTAAATATGGTATTATGACCATTATTCAAGAAGAAGTTTATTATTTCGGTAAAAGGCACTGCAGGTTAAAGAAGTCTTGGTTGTGTTCGATAAGTTATGGTGTTTACACATTTAGTGTTAATGAAATGCAAAATGAATGTTGCAAAAGACACTTTATATCAGATGGCGGCAACATGTTGTTGACTTTATTTCTGTAGGAAGAAAGTACAGAAAAATGTGTTTGTGATGGTTTAACTGTATCTGTAGAAGATCAGCTGATGCTAGCGTTAGTATGATTGTGGTGATCAAAAGAAAGAGAGACAGATTAAAGAGAACAGATGAAGGTTAAATAATTGATATGGGGGATGAGATATGAATGAGCAGTTAATTTTATATTGTTAGGCCTAAATAGATGTGTAAAAGGAAAGGTTGTTGATGTCCATACATTTGAGCTTAACTTATTAAGATTAAGCCAAGATGATAATGATTTGTTACGCAAGCGTCAACTCTGTTTTTCTGCTATTGTGTGTTAATCCACCAATACCGGATACAGCATAACGTTCGCTTAAAGTGTGTCAACAACAAAATCACACTTTTCATTTAATTCTCTATTTAGGTTTTTTTTTGGGAATATGGTTATCATGTGTTCCTAGTGTAAGAACTCAAAACCTCGAACTCTTACCACTTGGGATGCAGTGGTCATTGACATTGTTCAGAAAGATTAGGTAGCGTTTGGTTTAAAATGAGTTTTGTGTTTTGAGTTTTCATTATTAATTACAAAATATGAAAGAAGCGGAAGGACGACGGATAGAATGAAAGGAAGATAGAGGGAACCATGAGATTGAAGAACGATGAAAGGATGGATTATTTCTCGTGCTCTTATTTCTCAAAACATGAAAATAAAAATTTGTTTTCTATTTTATATGTTAACTTTGTTTTCTAAATTAGTCGTTTTTCACAATATACATATATCGTGCGCATTTTTGTATGGACGAAAACCCAAAACTAAAAATGATAAATCAAACGCTAATTAGTTTTTCTTTCTTGGAAGGTTTGCCCTTTTGGTCATTCATTTGGATAAACATATTCTAATATTATGTTGATTTTGATGTGTAGCCATACTTGCACGAGTCTCGTCACCTGCACGCGTTAAAGAGGGCAAGGGGGTGCGGCGGCCGCTTCCAGCCCAAGCAAAAAGACAATTCACAAACAACTAATTGCAATTCAGATGATAATAACAATTCGTGCTCAGATGACCAACAAAACGCAATGGAAAACACATCCGAATCTAAAAGGACAAAGAGTGCAGCTGCTGCTACATAA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK65710.1	5.1e-59	uncharacterized protein A4U43_C06F140
Swissprot	Q84JP1.1	8.0e-33	Nuclear transcription factor Y subunit A-7
trEMBL	D6MK73	8.5e-64	Nuclear transcription factor Y subunit (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G30500.2	47.03	3e-38	155	NF-YA7	nuclear factor Y, subunit A7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G03118	AT1G30500.2	185	84	4	1	181	1	175	47.03	3e-38	155
AfisC1G03118	AT1G30500.1	185	80	4	1	181	1	171	47.03	5e-38	154
AfisC1G03118	AT2G34720.1	158	52	5	60	207	48	191	51.90	6e-35	144

Ortholog group

Species	Genes
Allium cepa	g118437.t1
Allium fistulosum	AfisC1G03118
Allium sativum	Asa1G04392.1; Asa3G03275.1; Asa7G05651.1
Arabidopsis thaliana	AT1G30500.1; AT1G30500.2; AT2G34720.1
Oryza sativa	LOC_Os08g09690.1; LOC_Os08g09690.2; LOC_Os12g41880.1; LOC_Os12g41880.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02045.12	CBFB_NFYA	Family	106	161	97.0	6.7e-28

Gene Ontology

Accession	Ontology	Name
GO:0000049	F	tRNA binding
GO:0000436	P	carbon catabolite activation of transcription from RNA polymerase II promoter
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001221	F	transcription cofactor binding
GO:0005737	C	cytoplasm
GO:0005654	C	nucleoplasm
GO:0016887	F	ATPase activity
GO:0006400	P	tRNA modification
GO:0009414	P	response to water deprivation
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009785	P	blue light signaling pathway
GO:0010262	P	somatic embryogenesis
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016602	C	CCAAT-binding factor complex
GO:0032993	C	protein-DNA complex
GO:0033588	C	Elongator holoenzyme complex
GO:0043457	P	regulation of cellular respiration
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	P	microgametogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08064	NFYA, HAP2; nuclear transcription factor Y, alpha	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network