Detail information of AfisC1G03138


Location
GeneChrStartEndStrand
AfisC1G03138chr1580660877580685976-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020271200.12.2e-66MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP49.27.5e-59RMADS218
trEMBLA0A6P5GSF14.1e-62MADS-box transcription factor 23-like isoform X4

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT4G37940.160.263e-71 265AGL21AGAMOUS-like 21

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
--

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain105787.62.4e-25
PF01486.14K-boxFamily8517184.83.1e-24

Gene Ontology
AccessionOntologyName
GO:0000165PMAPK cascade
GO:0000977FRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0007584Presponse to nutrient
GO:0008134Ftranscription factor binding
GO:0010214Pseed coat development
GO:0010440Pstomatal lineage progression
GO:0042803Fprotein homodimerization activity
GO:0045944Ppositive regulation of transcription from RNA polymerase II promoter
GO:0048481Pplant ovule development
GO:0048527Plateral root development
GO:0048574Plong-day photoperiodism, flowering
GO:0071249Pcellular response to nitrate
GO:0080155Pregulation of double fertilization forming a zygote and endosperm
GO:1903338Pregulation of cell wall organization or biogenesis

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09264K09264; MADS-box transcription factor, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.