result

Gene information

Detail information of AfisC1G03421

Location

Gene	Chr	Start	End	Strand
AfisC1G03421	chr1	637453677	637454246	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_014504223.1	4.7e-43	transcription factor MYB44-like
Swissprot	O23160.1	7.3e-41	Myb-related protein 73
trEMBL	A0A1S3UDW9	3.4e-43	transcription factor MYB44-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37260.1	66.37	2e-42	168	ATMYB73;MYB73	myb domain protein 73

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G03421	AT4G37260.1	113	34	1	8	116	1	113	66.37	2e-42	168
AfisC1G03421	AT5G67300.1	103	29	0	14	116	4	106	71.84	5e-42	167
AfisC1G03421	AT2G23290.1	103	30	0	14	116	11	113	70.87	7e-42	166

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	16	61	57.1	1.3e-15
PF00249.28	Myb_DNA-binding	Domain	70	112	58.1	6.6e-16

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0051726	P	regulation of cell cycle
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005654	C	nucleoplasm
GO:0006338	P	chromatin remodeling
GO:0009414	P	response to water deprivation
GO:0009555	P	pollen development
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009739	P	response to gibberellin
GO:0010200	P	response to chitin
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010262	P	somatic embryogenesis
GO:0010439	P	regulation of glucosinolate biosynthetic process
GO:0016363	C	nuclear matrix
GO:0046686	P	response to cadmium ion
GO:0045624	P	positive regulation of T-helper cell differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0045995	P	regulation of embryonic development
GO:0048527	P	lateral root development
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:0055089	P	fatty acid homeostasis
GO:1901347	P	negative regulation of secondary cell wall biogenesis
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1902074	P	response to salt
GO:1904095	P	negative regulation of endosperm development
GO:2000022	P	regulation of jasmonic acid mediated signaling pathway
GO:2000031	P	regulation of salicylic acid mediated signaling pathway
GO:2000692	P	negative regulation of seed maturation
GO:2001280	P	positive regulation of unsaturated fatty acid biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network