result

Gene information

Detail information of AfisC1G03431

Location

Gene	Chr	Start	End	Strand
AfisC1G03431	chr1	640362058	640363314	+

Sequences

CDS

Protein

Gene

>AfisC1G03431
ATGGATAACCAATCACACTACCTGGATAATAACCTTTGGAATGATATCGATGGCCCGCTCACTGGTTTTCATTCCGATTTCAGGTGACTGTATTTTTTCTTTTTTtTCTTTTTTAACTTTCTAAATGATGACTTGATACTGTTACATTACTAATTTGAATGTCTTCTTAATTCTTTATCAGTAGTGGATCATCCGGTGGCTGGAATAATCAGGTATTGGATTTTGATGAAATAATCAATGTACTTCCTATATCACAGAGATATCCATCTGACCTTCTTTTGGCTCCTCGAAACCTTCTCGAAGGTATCATTATAACTATGTTACACATAAATATAACTTTGTTTTTTAAATCATGCTTTAACTTGTAACTTGTATGAATATGACAGAGTTCAACACTATCTTTGATGACTTGAATGGGGAGATAGAGAAGTCCAAGTCGAGCAACACCATATCTGCTGATGATCAGAAGAAGGAATTAAAACAAGGAAAAAAGGAGAAGAAATCATTGATGAAAGAGAAGAGCTATGACAAGGAAGAAAAAGTTCTAACATTTGAACAAGTATCAAAGTACTTTTACATGCCAATAACGCAAGCGGCGAAAGAATTAAACATAGGTCTAACTCTTTTGAAGAAGAAGTGTAGGGAGTTGGGAATTCCTCGCTGGCCTCATCGTAAAATGAAGAGCTTGCAAACTCTCATTAGGAATGTCCAGGTTATACATATTTATCTTTTCAAGTTTTCCCTATGTATCAAATTAGATTACTCTTGCAAAAGAACATAGAATGGTTTCTTTTTATCTAGGGCGTGCTGTTTGTTGATTTCTGTGATCAATTAACAGGTATAGGGAATGTAAAGTAATTAGAGTTGGGTTAGGATTTTAATTGAGTAATTAAATTGTTGAAGTCAGCGGATAAATTTAGATGTTATTACTATTAATGCAATTGTTAAATTGTCGCTACATGATATATGTGCAAAATGTAGGAATTAGGGAGAGAGGAAGGAGAAGAAGAGGCGAGAAACGCAATAGAAATTCTGGAGCAGGAGAAGGAATTAATGGAGAGAGAACCAGGAGCCAAAATGGAGGAGAAAACAAAGAGACTGAGGCAAGCATACTTCAAGGCTAATTACAAGAAAAGAAGAATGCAAAGCCAGCTTGTACCAAATGCTGCTGCTGATGTTGTTAACCAGAATCCGGCAACTAATTTTGGAGATGTTAATGATTACGTCTATGGTGGCGTTGGTCAATCTTTCTACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020255495.1	6.4e-46	protein RKD1-like isoform X1
Swissprot	Q9CA66.1	5.3e-29	RWP-RK domain-containing protein 2
trEMBL	A0A5P1F672	4.6e-46	RWP-RK domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G18790.1	63.64	9e-38	154	AtRKD1;RKD1;URP5	RWP-RK domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G03431	AT1G18790.1	121	41	1	120	237	126	246	63.64	9e-38	154
AfisC1G03431	AT5G66990.1	142	59	4	99	233	135	274	52.11	4e-34	141
AfisC1G03431	AT1G74480.1	109	38	1	121	226	134	242	62.39	3e-33	138

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02042.12	RWP-RK	Family	122	169	78.2	3e-22

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009793	P	embryo development ending in seed dormancy
GO:0051302	P	regulation of cell division

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network