result

Gene information

Detail information of AfisC1G03441

Location

Gene	Chr	Start	End	Strand
AfisC1G03441	chr1	642071971	642073161	-

Sequences

CDS

>AfisC1G03441
ATGGGCAGATCCCCCTGCTGTGAAAAGGTTGGACTGAAGAAAGGGCCATGGACACCAGAAGAAGACCAGAAACTTCTTGCTTATATTCAAGAAAATGGCCATGGCAGTTGGCGTGCACTTCCCATCAATGCTGGGCTTCAAAGGTGTGGAAAAAGCTGCAGACTAAGATGGACAAACTATTTAAGGCCTGATATAAAGAGAGGCAAATTCAGTCATCAAGAGGAACAAACCATCATCCAACTTCACGCACTCTTAGGCAACAGATGGTCAGCAATCGCTGGTCATCTCCCAAAAAGAACGGACAACGAAATAAAGAACTACTGGAACACACACTTGAAGAAGAGACTGACGAAAATGGGTATAGACCCGATAACCCACAAACCGAAGACAGACACGGTAAGCAGCAGTTCAGCAGATGGAAAGCCCTCGAGTTTCAGCCACATGGCTCAGTGGGAAAGTGCAAGGCTGGAAGCAGAAGCCCGCCTTGTCAGGGAATCTAAGCTTAGAAGTTCATCAAAACTTGAAACGGTAAGAACAGTGTTGTGGCAAGGACAGAGTAGTATTGACCTGGAATCTCCTACTTCTACTTTGAACTTTTCAGCAGCAGCAGCAGCGGGTTCTGCTACTGCAGTTTCTCAAAATTTGAATCATATGATGATGTTGAATGATAACAGAACAGTTGTTCCTGGCTTCTCAGTTGGGTTGCAAACTACTATGTTTAGTACAGCAGAAGATTCATCAAAAAAAGAATTTGTTCATGAAGGTTTCACTGGAATGCTGTTGGAAGATGCCGATGGTTGTAAGGATTATTCATTGGAGAGAGCTGCTGCTGATTCAGATAATGCTGATGAACTTTATGGAAGTTGCATTGAGGAAGAAGATAATGGAGGAAATGAAGATGAAAGCAGCAATTACTGGAACAACATTCTAAATTTGGTCAACTCGCCCACCCATGCACATGATTCATCATCTCCAAATGAACCACCCACATATTGGAAATAA

Protein

Gene

>AfisC1G03441
CCAGAGTAAATTTTACTTACAAACCCACACACCATGAGGGATAAATAAAAATATTAGCACTCATCATTTGGAAGAATAAAATAGAGAAAATAAGTATAAGAAATGGGCAGATCCCCCTGCTGTGAAAAGGTTGGACTGAAGAAAGGGCCATGGACACCAGAAGAAGACCAGAAACTTCTTGCTTATATTCAAGAAAATGGCCATGGCAGTTGGCGTGCACTTCCCATCAATGCTGGTACGGATTAATTTACTTATCTTGGATCTTTCATTATTCTCCTAGGCTGAAGTTTTCTTAAGAATAAAATTGATTGATGCATGCCAGGGCTTCAAAGGTGTGGAAAAAGCTGCAGACTAAGATGGACAAACTATTTAAGGCCTGATATAAAGAGAGGCAAATTCAGTCATCAAGAGGAACAAACCATCATCCAACTTCACGCACTCTTAGGCAACAGATGGTCAGCAATCGCTGGTCATCTCCCAAAAAGAACGGACAACGAAATAAAGAACTACTGGAACACACACTTGAAGAAGAGACTGACGAAAATGGGTATAGACCCGATAACCCACAAACCGAAGACAGACACGGTAAGCAGCAGTTCAGCAGATGGAAAGCCCTCGAGTTTCAGCCACATGGCTCAGTGGGAAAGTGCAAGGCTGGAAGCAGAAGCCCGCCTTGTCAGGGAATCTAAGCTTAGAAGTTCATCAAAACTTGAAACGGTAAGAACAGTGTTGTGGCAAGGACAGAGTAGTATTGACCTGGAATCTCCTACTTCTACTTTGAACTTTTCAGCAGCAGCAGCAGCGGGTTCTGCTACTGCAGTTTCTCAAAATTTGAATCATATGATGATGTTGAATGATAACAGAACAGTTGTTCCTGGCTTCTCAGTTGGGTTGCAAACTACTATGTTTAGTACAGCAGAAGATTCATCAAAAAAAGAATTTGTTCATGAAGGTTTCACTGGAATGCTGTTGGAAGATGCCGATGGTTGTAAGGATTATTCATTGGAGAGAGCTGCTGCTGATTCAGATAATGCTGATGAACTTTATGGAAGTTGCATTGAGGAAGAAGATAATGGAGGAAATGAAGATGAAAGCAGCAATTACTGGAACAACATTCTAAATTTGGTCAACTCGCCCACCCATGCACATGATTCATCATCTCCAAATGAACCACCCACATATTGGAAATAA

Functional annotation

Database	accession number	e-value	annotation
nr	AAO49410.1	4.9e-96	MYB1
Swissprot	Q9LXF1.1	3.3e-81	Protein MIXTA homolog
trEMBL	Q84U53	3.6e-96	MYB1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G15310.1	51.68	9e-86	313	ATMIXTA;ATMYB16;MYB16	myb domain protein 16

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G03441	AT5G15310.1	358	114	11	1	331	1	326	51.68	9e-86	313
AfisC1G03441	AT3G01140.1	351	115	7	1	315	44	379	52.71	3e-84	308
AfisC1G03441	AT5G15310.2	335	139	6	1	331	1	315	51.34	1e-82	303

Ortholog group

Species	Genes
Allium cepa	g97780.t1
Allium fistulosum	AfisC1G03441
Allium sativum	Asa7G06694.1
Arabidopsis thaliana	AT5G15310.1; AT5G15310.2
Oryza sativa	LOC_Os02g36890.1; LOC_Os08g33660.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	55.8	3.4e-15
PF00249.28	Myb_DNA-binding	Domain	67	112	58.2	6.1e-16

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0003682	F	chromatin binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009414	P	response to water deprivation
GO:0009506	C	plasmodesma
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009625	P	response to insect
GO:0009651	P	response to salt stress
GO:0009682	P	induced systemic resistance
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0010438	P	cellular response to sulfur starvation
GO:0010439	P	regulation of glucosinolate biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0048658	P	anther wall tapetum development
GO:0080091	P	regulation of raffinose metabolic process
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network