result

Gene information

Detail information of AfisC1G03946

Location

Gene	Chr	Start	End	Strand
AfisC1G03946	chr1	740723117	740724114	-

Sequences

CDS

Protein

Gene

>AfisC1G03946
ATGGCTTTCCCAGCAGAAAAGCATAGAGAAATAATGATATGTGAAAATGATAGGAAAACAATTCCAGCTCCATTTATAAGCAAAACTTATCAGTTAGTAGATGATCCGCGCTCGAATCACATTGTATCATGGGGAGAACATGATGTTACATTTGTTGTTTGGAGACCACCTGAATTTGCTAGAGATATTTTGCCTAGTTACTTCAAGCATAATAATTTCTCTAGCTTTGTGAGGCAGCTCAATACTTATGTAAGTTGTTTTTTCTTTTGTATTTATTATTCCAATTTTGGTTCTGCTTTTATAATTCTTCCTTGCATGTTTTTGTCCAGTATTGTGCTATTATTTATTTCATGTTTATTCACACCTTCATATATGTGCAGGGATTTAGAAAAGTAGTGGCTTGCAGATGGGAGTTTGCAAATGAGTTCTTCAAGAAAGGGCAAAAACATTTGCTCTGTGACGTTCAAAGAAGAAAAACTGCTTCTTCTGATCATCAAATTTATCAGTTTCAATGTTACAGTAGTCTTGAAAGAAGACAGCGTTCTTCAAATGATCTTGAGGATTCGACTTGGACTAATGTGAATTTACCCCAAACGTCGCAGTATAATCATGATTATAATGGATATTTGTTGGCTGCTTTAGAAGATAATCAGAGATTGAGAAAGAAGAACATTTTACTGCTATCAGAGCTCACTCAAATGAAAAGGTTATACAATGATATCATGTTTTATATCCAGAATCGTGCTAATATGAACACTAACTGTAGATCAAGGGAGATTGGATTAAGTTCGGTTAAGATAAGTGAAGAAATAGAGGAAGAAAATAGCATTAAAGTTTTTGGAGTTGAGCTTAGTGGGAAGAAAAGACTGCACCATCAAGATTGTTGAAATGTATTGAAAATAGATGGGGCACTGAAATATGATTATGATTTATGATAGTGGTTAGGAGAATGACTTATTTTGAGGATATGTAATTTGAGTAATGTCAGACAAATGCAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020276091.1	1.4e-66	heat stress transcription factor B-4b-like
Swissprot	Q9C635.1	1.4e-52	AtHsf-02
trEMBL	A0A5P1ECN3	9.9e-67	HSF_DOMAIN domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G46264.1	50.72	4e-59	224	AT-HSFB4;HSFB4;SCZ	heat shock transcription factor B4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G03946	AT1G46264.1	209	86	3	12	203	22	230	50.72	4e-59	224
AfisC1G03946	AT5G62020.1	218	112	4	18	225	17	231	42.66	1e-41	166
AfisC1G03946	AT4G11660.1	102	35	0	16	117	51	152	65.69	6e-39	157

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00447.14	HSF_DNA-bind	Family	25	114	105.8	1.2e-30

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0008356	P	asymmetric cell division
GO:0042802	F	identical protein binding
GO:0010200	P	response to chitin
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09419	HSFF; heat shock transcription factor, other eukaryote	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network