result

Gene information

Detail information of AfisC1G03959

Location

Gene	Chr	Start	End	Strand
AfisC1G03959	chr1	743716181	743719669	-

Sequences

CDS

>AfisC1G03959
ATGGAAGAGGGATCCGCCAACAAAAGGATTGTGTCCCATGCAAAAGCATCTATACTCTCAACCATCAAAAAAGCAAGGCTTGATATCCCAAAATTTCATGGAAAACCTCCAAAAATAAAAGGTTTGGCAATTTCTCCTAAGCTTAGGCGATTAGTTATTGCCACAGCTCAAGAAAAGAATCTTCTTACCTCAGAAGAATTGGAATCACCTGACAAAGCTGATAAGGAAACAAAAGAAGAAACTGAAATAACACCTTCAGGAGAAGCTATAGAAGAGTTGAGGACGTCTGATTCAGAAACAAGTTTTTCTTCCAAAGCAAGCACTTCAATTTCTTTTGATAATCAGGCAGTACACAACAACTCTTCGCTTTGGCGTGGTTTTAGCCGCCTTTGGAAGCAAAAGTCTCTTAGAAGGCTGTCTAGTTTTCCACCTGTAGGCTCTTCTAAAAGAAGGTGGAAAAATGGCAGTGGAGATAATCTTGACGATGAACTAAATGAAAGTGGTTTGGATTGTGATTCTTGCTTCTTCAAGCCTTCTTGGAAAACCTTTTCCATTGCTGAACTTCGAAAGGTTACCAATGACTTCAGTGAAGATAATATCATTGGAAAGGGTGGTTTTGCAGAGGTTTATGAAGGATGTTTAGAGGATGGTCAGTATGTTGCAGTTAAAAGGTTGATTAGAGGAACGATAGAAGAAAGAACTGATAACTTCTTATCCGAGCTAGGCATATTAGTCCATATAGATCATCCAAATATAGCCAAGTTAATAGGAGTTGGTGTTGAAGAAAACTTGCATCTTGTTCTTCGTCTTTCTCCTAATGGTAGTTTAGCAACTCTCCTTCATTGTCGCGGTCCCAGAGATAGATTAGAATGGAGCATACGATACAGAATCGCATTAGGAACAGCAGAGGGTCTTGAATATTTACATGAGAAGTGCCCTCGAAGAATCATACATTGTGATATGAAAGCTGCAAATGTTTTGCTTACTGAAGATTTTGAACCCCAAATTTGTGATTTCGGGCTTGCAAAGTGGCTTCCAGATCAGTTGACTCACCACAAAGTATCAAACTTTGAAGGCACATTCGGTTATCTTGCTCCGGAATATCTCACGCATGGAGTAGTTGATGAAAAAACCGATGTTTTTGCTTATGGTGTAATTTTATTGGAACTCATCAGTGGAAGAAGAGCGTTGGATACTTCACAAAAAAGTTTAGTGATGTGGGCAAAGCCTTTGATTGCAAAAAATGAAACAGATGATCTTATAGATCCTTCTTTACGTTCGTACAACGCCGATGAACTAAAGTATGTGATTGGCGCCGCATCTATGTGCATTCAACAATCTTCAGTGTTAAGACCTAAAATTAGCCAGGTGATAGGTTTGCTGAAAGGTGAAGAAGCGCAACTGAATTCTCCTCAGATGCAACTGACTCCGACAAGGAGAAGAACTTACTCTGAAGAATTGTTTGATGCAGAAGAGTACAATGCAACAAGATATCTAAGTGATATGAATCGACATAAGCAAATCGCTTTAGGCTTTAAAAGTTCTGGTGAATTAGGTGTATCTGAATAA

Protein

Gene

>AfisC1G03959
GCAAATCATGCAATAAACATTCTTCTAAAGATAATAGGCTGTGAAAATAATAGCATGATCCACTTACTATAATTAAAAGAAACTGGGAGATAAAAATGCAGAGAAAGGAGGTTGGCAATAAAACATTTGGATAGGTTTGAGGTTGAAAAAGAAATATGAATCGTGAGATCTTCTTTTTCAATTTTTGAGATTTCACAATGTATTCTTGAATTCAATGGAAGAGGGATCCGCCAACAAAAGGTATGCTTTAATTTGCTTTAAGTTTCATGTTTTGTGATTCTTATTTTTCCTTCGTTCTGTAATATAAGTGACACAAAATTTGTGAGATTATTCTGTAAGAGAATAGCATCAGAAAAAATTCTACAGAGAATTTATTGATAATGCTAACTACTTTAAAACTTTATATATACAGTATATTGGATTTATTTATTTTGAAGCCCAAAAAGTTTTAGTCAATGGTTATTTTAAGTCTAACAAGTTGTTCCTACATTGAAGAGTTTTAAATACATAACATCAATAAAATATGTATTCTAGCAAGTATAATATCCGTGAAATACTATAGGTATTATGTTCAATTCAATTCAATTTAAGTAAACGATTCTAGGTTTTATTTCTTGTTGTTTAAACTTGAACAGGATTGTGTCCCATGCAAAAGCATCTATACTCTCAACCATCAAAAAAGCAAGGCTTGATATCCCAAAATTTCATGGAAAACCTCCAAAAATAAAAGGTTTGGCAATTTCTCCTAAGCTTAGGCGATTAGTTATTGCCACAGCTCAAGAAAAGAATCTTCTTACCTCAGAAGGTGATCTTATTGATCGTTAAACACAATTTATATGTTGGTTCAATTAATTTCAATAATGTTCATTGTCTTTTTTCTACATTTGCCGGTTCATTTATTCATGTATGTATTCAATGAGTTCATCATTGAAGCGTGTGTTCAGCATTAAAGAGAAGGATTATGTATATTAGAAGAAAAAAATGTTTATAAGTGAAAAGAGCCATGTCCACTTAGAAAAGGCATCTAGCGTAGGGTATACATATGTGATTTCATGTTATTTGTGATAAAAAGTAGGGAAATGCAATAAGTATGAGTTGAATTAGAGTGTATATTGAGTGAGTTTCACCACAAAAGAGTTGTATGGATCTTTACATGTGTTATATAACAAAGAAAATTATCACACCTCAAATGAAACTGAGCAAAGATCCCAGTTTCCTATGTTACATAGGATCGTCAATTTAATGTTATAACTTATAAGAGTTAGTTTAGCTGATCATATCCTGTTTTTACTTTTTGTAAAATAGAATTGGAATCACCTGACAAAGCTGATAAGGAAACAAAAGAAGAAACTGAAATAACACCTTCAGGAGAAGCTATAGAAGAGTTGAGGACGTCTGATTCAGAAACAAGTTTTTCTTCCAAAGCAAGCACTTCAATTTCTTTTGATAATCAGGCAGTACACAACAACTCTTCGCTTTGGCGTGGTTTTAGCCGCCTTTGGAAGCAAAAGTCTCTTAGAAGGCTGTCTAGTTTTCCACCTGTAGGCTCTTCTAAAAGAAGGTGGAAAAATGGCAGTGGAGATAATCTTGACGATGAACTAAATGAAAGTGGTTTGGATTGTGATTCTTGCTTCTTCAAGCCTTCTTGGAAAACCTTTTCCATTGCTGAACTTCGAAAGGTTACCAATGACTTCAGTGAAGGTTTGTTTATTATTTGAAAATTTAAAGCAAATGATTGACTGCAAATGTAATTTGGCAACGATGGAATGCAGATAATATCATTGGAAAGGGTGGTTTTGCAGAGGTTTATGAAGGATGTTTAGAGGATGGTCAGTATGTTGCAGTTAAAAGGTTGATTAGAGGAACGATAGAAGAAAGAACTGATAACTTCTTATCCGAGCTAGGCATATTAGTCCATATAGATCATCCAAATATAGCCAAGTTAATAGGAGTTGGTGTTGAAGAAAACTTGCATCTTGTTCTTCGTCTTTCTCCTAATGGTAGTTTAGCAACTCTCCTTCATTGTCGCGGTAAGAATTCTTCTTCATTCAGTTTAGCATGGTACAAAACTTGAGTTTAAATTGATCTTTTTGGGGTTGTTATATACTTCATTTGTATTAGGTCCCAGAGATAGATTAGAATGGAGCATACGATACAGAATCGCATTAGGAACAGCAGAGGGTCTTGAATATTTACATGAGAAGTGCCCTCGAAGAATCATACATTGTGATATGAAAGCTGCAAATGTTTTGCTTACTGAAGATTTTGAACCCCAAGTATTGGATTTGTCCTTTTTTACCCAATGACTGTCATATGTAAATAAGCTTAAAGTTCAAATAACATGCTAAAGTCATTGAAAATGCAAAGAATATCAGTTGTAATTTTCTGATGCAGATTTGTGATTTCGGGCTTGCAAAGTGGCTTCCAGATCAGTTGACTCACCACAAAGTATCAAACTTTGAAGGCACATTCGGGTTAGTGATATAACAGACTTACATTTCCGACCCTGATACATGCACAGATATACCATATGACATTTGACTATTGGTGCATGTTTAACACATATCTCTAAATAGCCAAAAAAAGCATATCGTACAATGAATTTTTCTCTACTCCTAGTGAAGCATGATGTCTTCATATGTTGTCTTATATTATTTCCTACATCGACAGTTATCTTGCTCCGGAATATCTCACGCATGGAGTAGTTGATGAAAAAACCGATGTTTTTGCTTATGGTGTAATTTTATTGGAACTCATCAGTGGAAGAAGAGCGTTGGATACTTCACAAAAAAGTTTAGTGATGTGGGTATGTCAGTCTTTGATACGATACACTTCCTAATATGCTAAGATCATTTGTCATTTGTTCGTATATTTATGCAGGCAAAGCCTTTGATTGCAAAAAATGAAACAGATGATCTTATAGATCCTTCTTTACGTTCGTACAACGCCGATGAACTAAAGTATGTGATTGGCGCCGCATCTATGTGCATTCAACAATCTTCAGTGTTAAGACCTAAAATTAGCCAGGCACGTTCAATTCCATTTTTCAAAGCTTTTATGAGAAGTCCAACTCTATAACCTTTTTTTGTGCGATTTTGATTTTAATTGTTCTGATGGTAGGTGATAGGTTTGCTGAAAGGTGAAGAAGCGCAACTGAATTCTCCTCAGATGCAACTGACTCCGACAAGGAGAAGAACTTACTCTGAAGAATTGTTTGATGCAGAAGAGTACAATGCAACAAGATATCTAAGTGATATGAATCGACATAAGCAAATCGCTTTAGGCTTTAAAAGTTCTGGTGAATTAGGTGTATCTGAATAATAGTGTTTTTGTAAGAAGAACTGCATCATATACTTTGAATAGTAGGAGATAATTATTAGGTACAAATTGATATTTTAGAGTAGGTTACTTGTGTGCTATATGTAAGGTTTGAATCATGGTTTGAGATTCGGGCCGGAACCACCGGATTCCGGCCATCCCGTTTCGGTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020254302.1	4.8e-154	receptor-like cytosolic serine/threonine-protein kinase RBK2
Swissprot	Q8RXC8.1	4.7e-122	Protein ROP BINDING PROTEIN KINASES 2
trEMBL	A0A6I9QSN5	2.3e-150	receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G18910.1	55.89	1e-126	450		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G03959	AT5G18910.1	399	166	6	119	511	113	507	55.89	1e-126	450
AfisC1G03959	AT3G05140.1	414	174	7	103	511	56	459	54.35	2e-126	449
AfisC1G03959	AT5G35960.1	433	187	8	61	487	20	425	49.19	2e-110	396

Ortholog group

Species	Genes
Allium cepa	g285177.t1
Allium fistulosum	AfisC1G03959
Allium sativum	Asa7G05010.1
Arabidopsis thaliana	AT3G05140.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	196	403	148.0	2.8e-43

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000166	F	nucleotide binding
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0005634	C	nucleus
GO:0007166	P	cell surface receptor signaling pathway
GO:0019722	P	calcium-mediated signaling
GO:0009556	P	microsporogenesis
GO:0009623	P	response to parasitic fungus
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009814	P	defense response, incompatible interaction
GO:0009845	P	seed germination
GO:0010068	P	protoderm histogenesis
GO:0010152	P	pollen maturation
GO:0012505	C	endomembrane system
GO:0019901	F	protein kinase binding
GO:0033612	F	receptor serine/threonine kinase binding
GO:0042335	P	cuticle development
GO:0046777	P	protein autophosphorylation
GO:0048364	P	root development
GO:0048367	P	shoot system development
GO:0051020	F	GTPase binding
GO:0071369	P	cellular response to ethylene stimulus
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network