result

Gene information

Detail information of AfisC1G03992

Location

Gene	Chr	Start	End	Strand
AfisC1G03992	chr1	749207787	749211775	+

Sequences

CDS

Protein

Gene

>AfisC1G03992
ATGGAAATCATCAGAAATAATTCTATCTTCATGGAAAAGAGTTTAGAATACAATGAAGCAAGAGGTAGGAGGACAAAACAAGTGAAAGAGAAGGGCTTTTCCCAAAAAGAAACCATTTGGTATCGAGAGGTACCTCTTGGTACCAAGAGGTTTGAATTGGAGTTTGGGCCGGCATGCTCTCTTCTTAACCTATGGGTTTGCATCTAGACCATATACAACGTTGGCATATGGATATGCAGAGCAGTTTCTTTATAAATATAAACCCAACGACAACTAAAGAAGGATCTTTTGACCATTCTCCTTCTTCATCTCCTATCTCTATTCTCTATGTTACCAAGGGAGATACCCTTGGCAGTTCTAGGCTTAAGAACTTGTCAACCCTTTGTACTTACGACTTACGTAGGCTAGAGATTTCTGAACCACTATAAACATTCTTGTGTCTCTTTACTTTTTTCATACACTTTGCTAGATCTTATCCTATAACATGTTATCTTTGAGTGTTGTGCCACTTTTGACGTCAATACACTACAACAAAAATACTCTATTACAACGCCCTTTTTACAACGGGCATTTGCTGCCCATTGTAATAGAAGGCTATTACAACGGTCCATTCAAGACCGTTGTAATAGATGCTTATACAACACATTTTTTACAACTGACAATGGCTGCCCGTTGTAATAGAATGCTATTACAACGGTCCTTTCATGTCCGTTGTAATAGATTCCAAATTTTACAACGTTCACAAAATGACCGTTGTAATAGTTACCAATTTTACAACACTCATGCAGTGCCCGTTGTAAGAGGTTCGAGCAGCATTTTAATAGACTTTTTACTTTCCAGTTATTAGAGAATCATATTCGTTTTTTCACGAAATAATGGCGACTGGCGACCCGTCCTCATCAAATCCCTAATTCAAATCGCCTTCGTTCGTCGTCCTCCTCAAATCCCTAATTTCCAATTGCCTTCGTTCGGCCTCCTCCGTCTTGATTTCTATTAGATCTTGCTCGAGTGATGTGGCTCACGTCTTGATTTGAAATGCTTCTCAAAATTGGTAGCCGAGATCTGGGCTATGTCGCTTGAATCCCAAACCATCTTCGAAGCTCGCCTGAAATGTCGGTTGAATCCCAAAATTGGTAGCTCAGATCTGGAGAAGCTCGTCTGAAATGTCGCACATCTCCGTAGCTGTTTGCTGCACTGATATTGTTGCTGGATTGCAGTTCATCGATTCATGTTGTTGGGATTGGATCTGTCTTGTGTCTTGCGTGCGTTCATGTCTCGGAAGAAAGGAGGAAACGTGAGTTTTAAAGGTGAGTTAAATAACTCACTAACCTATGTCTATTCATTACTATCCCTGAATTTCTTATGCATTGGTGTTGATTCTTGAATATATAATTTTAGCTTTGTTGATGCCTCACTTCCTGCGTGCAGTTTTATTTACTGACTTTCAGTTTTTCCTCCTTGCGTGCGATCATTGGTGTTTTGCAACATATTAACACATTGTGATTAGATGCAGTTTTTGATGCCTCACATTGGTGTTTTGTGACTCATACTTTTCCATTTGAAATAATTTAAGCGAGTTGAAGAGTGAAAACCATTTAGATTTGCCGACTGGAGTATGCGTAGAAAAAATTAGAAAACGTGATTCAATGCATATGTGCATGTTCCCCACTTAAAAAGTTGTGTTCTATGTGTCATATTTCTATTGTGAGGGACAAATTACTATGGGGTACGTCTACCATATTACTGTAGTTATTGCTCTTTTTTCCATTATTCCATTGTCAAAGCATATTGCAGTAGATGGTTGACAGGTGACTACATGGCCATTTTTCATCATATAATTTTACAAATTTCGCTAGACCTTCCAAATAATCATCGTTGGACTTGGAGTAGTCATTCGTTGTTTGAATGTATGTTCTCTTATGATGCATTGTTTATTTAATTTAAAAGGAACGTAGTAAGAGCAACATGGGTCTATTTTACTATTATAAAGTCGTATATTATTATGAGTAAACAAGGCCGGTGCCGCCTAAAAGTCTAGTTGCATGGGCCCAAAGTAGTTGGAATTCAGCTGCTCGCTTTTACCTTAGCGATTCAAACTCTGAAGTTGAAGAAAAGAGCATACACAGAGTACAGTAATTGGAGTAAAACGTATTTCCAATAGTGCTGAAGCATTTGCATGTGTAGTATAAGCTTCTTTTTCTTTCAATTATACCGAATAATTTGTACTACATTCCCAATTTACAGATTAGAGCTAAACAAAATTGCAATTTTTACAGACCTAAAATGAAGCTGTAACTAAAATACATTTTCTTTTTTAAAATTAAACAAGCATACTTTTCTTTTTCCTATTGATCGTTATCAACAATAGTCTATAACAAATCAGTAATTGCTGAAAATGTAAACATCTAAATAGTAAGATAGATTAAATCCTTATTAGTGGCTATTTAAGCAAACCAAATAGTAAGTTAGGTTGGGCAGCATTATATGGTGGAGTTGGTGTGATGTCAAGTGGAACAATTGTACACTAATTGACATAAATAAAATAAGTTATTACTTCGCTTCCATTGTTGCCTGGATTTCCTTTGAATTATACTTCATGTACATATCATACTATGCAGAACATATAGCTTGTGTCATAATCGATAACAGGAGCATTTGGATTTGATGACGGTAGAACCTTGCATTATTTCAAAATATGATTGAAAGTATGTTTAGCATGACACCAATAAAGTAAAGAAAGTAGAGCTACGTGTACGATTTGATATGCTTTTAGCTAGCTTTTATCTTGTCGCAGAGATCCACTAAATATCGCTGTTTATCTTTACCTTAGATTACCATTGCAGATTTTGTTTTGCACTTTGTATGGCAAAGGTTTTTACACTAGTTATTCTTTCCTACGGTGCACTTTGTATGGTAAACCCTCAAGAAAGTAGAGCTAGTTCCGAATTTTTCCCTTAGCAGCACATTTTTTGTTCAGTGAAATACAAACAGGAATATATGGTGTAAACCAACCTTCCTCTTCTCACGGTTGAAAACCGTTTAAATTGCTTCTGTGACTGGTAAATGATATTTTAATATTTGAATAAGAACACTATTCTGTGTAAGATTATTACTGAAGTGATTGTTCTCTTCACCAAATTAATGAGCTGTATTATAAAACATAATAAACCGACTTGTACTTCCAAAACATATCTGTTATATTAAAATTGGTTTGACCAAAATTAGTTTATAGATCATTATTATTTAATATTCACATGTAATACAGCAGGTAAGAAAGTACCTATGGCTTCAATTGCAGTACTCATTTTAGTCTATAGGTTTTTCCATTTAATCCATCTTTTTAATTAATTCTATGTGCTTGATTTGTACGTAGCTGGACATTCGATGAGGAGATGCTATTGAGCTACCATGAATCGAGCTCAACAGATTACAATGCACCTTCAAGTTCAAGTAGTAGAAAGAACATAAAAGAGATGCAAAGAAAAAGAAGAAAATTTGATGATAGTCTTTATGCACTCAGAAGTGTGGTTCCTAGCATTTCTAAGGTATCACACATTACTTGGAACCCTCATTCTTAGCTATGCCAATAATTGTAACTTAATAACTACAATTAAATAACATATAATTTTATTTTATATTTGAAAATTAGATGGACAAAGCATCAATAATTAAGGACACAATTGATTATGTTCAAGAGCTTCAAAGGCAGGAGAGAAGTCGGGTTGTAGTTTGAAGAGGTGCACACTGAAGACAGTGTTAGACTGAAGGGAGTTGCGGCAAGGTTGGAGTTACAGGCAGTCAAAGATGATGTTATATGTGTTGGTAGAACAGGAAGATAGTAAGGCGGAAAGATTGTTGGTTGTAGTGTAGCAGTGGATTGGTTGCTGTAGTTAGAGGTGGTAGACTGGTAGTTAAACACACTTGAAATGAAATGATTTTGGTTGTTTTATGATAATATTTATTACTCGTTAAATTATTCATTATTGGTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267843.1	1.3e-14	transcription factor bHLH35-like
Swissprot	Q700E3.1	6.3e-11	bHLH transcription factor bHLH027
trEMBL	A0A5P1EUS4	9.2e-15	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G29930.2	50.00	2e-14	75.1		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G03992	AT4G29930.2	82	39	2	68	149	26	105	50.00	2e-14	75.1
AfisC1G03992	AT4G29930.3	76	35	1	74	149	31	105	52.63	2e-14	74.7
AfisC1G03992	AT4G29930.1	82	39	2	68	149	26	105	50.00	2e-14	74.7

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	99	144	24.8	1.4e-05

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0046983	F	protein dimerization activity
GO:0010444	P	guard mother cell differentiation
GO:0050826	P	response to freezing
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0016597	F	amino acid binding
GO:0034756	P	regulation of iron ion transport
GO:0048657	P	anther wall tapetum cell differentiation
GO:0071281	P	cellular response to iron ion
GO:0071369	P	cellular response to ethylene stimulus
GO:0071732	P	cellular response to nitric oxide

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network