result

Gene information

Detail information of AfisC1G04033

Location

Gene	Chr	Start	End	Strand
AfisC1G04033	chr1	753248026	753250450	+

Sequences

CDS

>AfisC1G04033
ATGAGCATTGATTACGGCGAAGCTTACGATGCAGGAAGGAAGAGATTTGAACCGCAACAGGTTGAGGTTCTCAAAAGAGTTTTCAGGGATTGCCCCAATCCGGATGAAGGGAAAAGAATTAATCTGAGTAGAGAGTTGGGACTGACGCCACAGCAGATCATGATTTGGTTTCAAAACCAAAGGAATTCCATCAAATTAAAAAATGAAAAGCTTTCTAATTGCTCCCTTCGTGCTGAAAACGACAAAATGAGGTGTGAAATTACTGAGTTCCAAATGGCGTTAGGAAATTGTCTATGCTCAGAATGTGGTATTGCATTGTCTTCTCAAGACGAGGAAGAGCAGTGGCTACAACTGAATAATGAGTGTGTTAAGGCTGAGATTGATGAATGCATGAGAATTATAACCGATAATATGGGAAGGCCATTTGCTGAAATGAGTTTGATGCATTGCCCGCTGGACCCTGCATCAACTGCAGAAAACACAAACAGATGCTATGACCCATCTTCAGAAGTTGTTCTATCAAATAACTCTTCTATGAATGTGCCGCAACCACTGCATCCTTTCAACACTGCAATTTCAAACAAGGATAAAGCATTAGTGACCAAGCAAGCAAGCAATGCCATGACCGAACTTATATTGCTAGGCCAATCAACTGTAGAGCTTTGGTTTAATCCCATGTATGAAGACAAGGAGGTTCTTGATCTTCGCAACTATCGTAGGATTTTCAAAAAAATTGATTATCGTTCCAGTGACCCCAGCATTCGAGTTGAAGCTTCAAGGGCTTCCGGTCTTGTCTGTATGAATCAGCTAGCACTGGTTGATATGTTCATGGATCCAGCCAAGTGGGCAGACCTATTTCAGACTATTGTGTCCAAGGCAAAAATGATTGATGTGCTTTCAGTTGGAATTGGTGGAAATAATCACAGTGGATCATTATTGCTGATGCATAGTGAAATTGGAATCCCTTCTCCTCTCATCCCATCTAGTCAATATTGCTTTGTTCGATATTGTCAGAAGTTAGAGAATGGCCTTTGGTGTATAGCTGATGCATCAGTTCATTTGCCAGGCTATGATCCGAAGAATAGAATGTTGCCTTCGGGTTGCTTGATTCAGGAGATGCCTAATGGTTACTCTCAGGTACCTCAACTGTGTTTACTTCTAATTTCATGTGAACTGAATTTCTTTTCCTACTTCATTGTATTGTGTTGTAGTGACAGTGGGTGTAGTTAA

Protein

Gene

>AfisC1G04033
ATGAGCATTGATTACGGCGAAGCTTACGATGCAGGAAGGAAGAGATTTGAACCGCAACAGGTTGAGGTTCTCAAAAGGTATGCTAAATGATATTCATTTTGTATTTTATTTTTAATTCTGTGAAACCTGTTAATGTGATCTGGATACTTTTTGTTATTTTTCCTTGAGAACAGAGTTTTCAGGGATTGCCCCAATCCGGATGAAGGGAAAAGAATTAATCTGAGTAGAGAGTTGGGACTGACGCCACAGCAGATCATGATTTGGTTTCAAAACCAAAGGAATTCCATCAAAGTAATGTTTCAGTTTTTTTCTTACCTCTATTATTTCCTTTATAATCATCACTGCTCTCAACTTATTGACAGGAAGTGGTAACTAATCTAGATTGTTAAAAAAATATGCCTACAAAGTTTTTGATTAGTCTGATTAAATACTTATTTTACCATTTTTTATATAGTTAAAAAATGAAAAGCTTTCTAATTGCTCCCTTCGTGCTGAAAACGACAAAATGAGGTGTGAAATTACTGAGTTCCAAATGGCGTTAGGAAATTGTCTATGCTCAGAATGTGGTATTGCATTGTCTTCTCAAGACGAGGAAGAGCAGTGGCTACAACTGAATAATGAGTGTGTTAAGGCTGAGGTTTGTTACTTTCTTTAGCTTATCATGATAATATTTATCATATTTATTTATTACATCTTTATGGATCAAAGTATTGTCCATGGCTTTCTAGAATATCCTAAGCTGAGATGACCAGGAAGGACCCAAATTTCCTTTTACTAATTTTCCTAAAATCCCACTTGTCCTTTTGTGTTCAAAACTATCAATATGAAACAAAAACATACAGATTTCGGTTCACGTGTTATTAAGATCATCGCCACAAAGTTTGGGATTTTTGAAATTTCTAGCTCATTTAGAACTACTTTTCAAATCGATGACAAAAATAATTATTTTCGATTACTCTTATTAACTTGGATTTTCAAGTGAGCTAAAAGTTCAGAATGACGCGACATTTTGTAGATGTATTCTATCTACAATGGAGATGATCATGTAAAAAATTATTCCATTTCAAAACTTCTATCTAGGTTAAAACTACATTTCTTGTCGGCTGTTAAAATGCATACATGTTAAGTGATTCATGGTGATTTATGATTTTAAAGAAAAAGTTTCAAAAAGATCTGAACTTTCGGATGGATGATCTTGGTAGCAAATATAAGATAATTACAAAATTTTGGTTTGTTTGACATTTTTGACACAGAAAGACAGAAGTAGGCTAGGGATAGAGAGCGTGTTCTGTTTCAGTTTGTGTAGCAGCTTTGAAAGTATTTGTTGTTCCTTTTTCATTAATTACTGATGTATAGGCTACATTTGCAATTCTACTTAACAAAAACTGCAGATTGATGAATGCATGAGAATTATAACCGATAATATGGGAAGGCCATTTGCTGAAATGAGTTTGATGCATTGCCCGCTGGACCCTGCATCAACTGCAGAAAACACAAACAGATGCTATGACCCATCTTCAGAAGTTGTTCTATCAAATAACTCTTCTATGAATGTGCCGCAACCACTGCATCCTTTCAACACTGCAATTTCAAACAAGGATAAAGCATTAGTGACCAAGCAAGCAAGCAATGCCATGACCGAACTTATATTGCTAGGCCAATCAACTGTAGAGCTTTGGTTTAATCCCATGTATGAAGACAAGGAGGTTCTTGATCTTCGCAACTATCGTAGGATTTTCAAAAAAATTGATTATCGTTCCAGTGACCCCAGCATTCGAGTTGAAGCTTCAAGGGCTTCCGGTCTTGTCTGTATGAATCAGCTAGCACTGGTTGATATGTTCATGGATCCAGTCAGCTCTTTTCTTTTAACCTTTTTTTTTTGTAATTATTGCTATGAATATGAATTCAGCATAGTATGTATAGTTAAACTTTACGTTATTGTAGGCCAAGTGGGCAGACCTATTTCAGACTATTGTGTCCAAGGCAAAAATGATTGATGTGCTTTCAGTTGGAATTGGTGGAAATAATCACAGTGGATCATTATTGCTGGTAAATCAGTAATACTTCATTCTTACTTTTGGTTGTATAACATTCATGATTTTTGCTAACCAATAATTTAAATGAACTTCTAATGCAGATGCATAGTGAAATTGGAATCCCTTCTCCTCTCATCCCATCTAGTCAATATTGCTTTGTTCGATATTGTCAGAAGTTAGAGAATGGCCTTTGGTGTATAGCTGATGCATCAGTTCATTTGCCAGGCTATGATCCGAAGAATAGAATGTTGCCTTCGGGTTGCTTGATTCAGGAGATGCCTAATGGTTACTCTCAGGTACCTCAACTGTGTTTACTTCTAATTTCATGTGAACTGAATTTCTTTTCCTACTTCATTGTATTGTGTTGTAGTGACAGTGGGTGTAGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008789232.1	1.2e-83	homeobox-leucine zipper protein ROC8-like
Swissprot	Q9FX31.1	3.8e-71	Protein HOMEODOMAIN GLABROUS 11
trEMBL	A0A8B7C0Q7	8.5e-84	homeobox-leucine zipper protein ROC8-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G73360.1	40.00	2e-74	276	AtEDT1;ATHDG11;EDT1;HDG11	homeodomain GLABROUS 11

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G04033	AT1G73360.1	395	203	11	10	380	30	414	40.00	2e-74	276
AfisC1G04033	AT1G17920.1	379	211	11	15	380	27	394	37.99	1e-64	243
AfisC1G04033	AT4G21750.2	386	218	9	15	380	68	439	34.72	7e-58	221

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	13	64	56.2	2e-15
PF01852.16	START	Domain	204	381	73.8	1.1e-20

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009828	P	plant-type cell wall loosening
GO:0009845	P	seed germination
GO:0009913	P	epidermal cell differentiation
GO:0010091	P	trichome branching
GO:0048497	P	maintenance of floral organ identity
GO:0048825	P	cotyledon development
GO:0090627	P	plant epidermal cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network