result

Gene information

Detail information of AfisC1G04036

Location

Gene	Chr	Start	End	Strand
AfisC1G04036	chr1	753704620	753706337	+

Sequences

CDS

Protein

Gene

>AfisC1G04036
CTTGGCCTACTCTCCATTGAGAAGCTAGTCGGTCGCAGATTCAATGGAGTTCATTGACGATGAATACCGCCCACGTTTCCAAATCCAATCCCGCCCTCTCCCCTCCTCCTCCTCAAATCTCCAGTACACCCCGCCCACCAAACTCCACATCGTCACCTGCTTCCTCTTCTCCTTCCTCCTCCTCTTCCTCTCTTTCCGCTTCTTCTCCGAGTCTCAAACCCTAACTTTCTTCCTCGTCTGGTTCTCCCTTTCCTTCCTCGTCGCCCCTTTTACCCCATCCTCACTCACCGGCGGTGACCCCACCGTCGGCGCTGGTCCAATCTTACCGGACCCCGTACCCGAAATCCTGTCAGATCCCGAAGTCGATCGCCTTCCCCGCCGCTCCCGTGCCCGCAAAACTGACAACAGCACCTCCGTCCCCAAACCCCAGCCTTCGACTATTCCAAAACCAGATCTGAAAGCAGAACGATCCGATAAAGAAGTAGAGGAAGAGCCGATCAAAGAGGAAAAAGAATGGAGTGAAAAGGACTACGAAATATTAAAGAAACAGGTATCTAAGCATCCTGTAGGGGAGCCAAGGCGGTGGGAGAAGATCGCAGAGGCATTTGAAGGAAGGTTTAAAGTGGACAGCGTTATAAAGATGGGGAAGTCAATGGGGGAGAGGAAGGGCGGAGACAGTGATTCATTTGTGCGGTTTATGAAGGATAGGAAGCCAGTGGACAAGAGAGTTGAGAGTGAAATTGAGAATGTAAGGAACCTGAACTGGAGTTCGAATGAGGACATTGCATTGTTGAATGCATTGAAAGCATTTCCTAAGGATGTGGATATGAGGTGGGAGAAGGTGGCGGCAGCAGTGCCAGGGAGGAGCAAGGCAGAGTGTGTGAAAAGGGTTTCTGAGTTGAAGAAGGATTTTAGGAGCTCCAAATGACTGCGTTCTTAGATAAAGAGGTTTGATGTATTGCTCCTTTTCAATTTACTGTGTTGAGGCTTGTACTGTTTCCGGCCATACATGAATTTACAATACCGTTTGTTACACATACTATCAGAGATGAAGAAAAGATTACTATATTGCTACTTATTACGGTTATTGTTTTTGTTGCTGGGAAAACATTTCCGTCAAAGTTCTTGAATATAACGTTATTGTTTCCAAGAGCATTTTGAACAACCTTCGATTCAATTCAGGTTGAATATGAACGCTGTTGGAGAGGTTGCTATTCAGTGATGAGCAATATTGGCCGGTGATATTTTAAATCAAATTCAGTATTCTGACTTTGCCTTGGATACCTATTTAAAGGCATCCAACATGCGTTCGTGACACTCATTTGTTGCTTATTTCAGAGGGGTTTGGCTCTATACGTTTACTAGGTTGAAACCAGTGCTTAATGGGTGTATGATGGGTATTTTTTGGTGGGTTGTTATATATATAGGTTTTGTGAGAGTGTGACATACTCTAGTATAGTTGATAATCTTGAGTTCATTGTTGTGGCATATCATAGCATCGATCCGGTTAGGTGGATGCACTTATATCTGCACTGGTTTTGTTGATTCTGTTTTGTAAAGTAAACGTAGCTATTTTGCAATGTAGCTATGCACTACTACGTTCTTGAGTCTTGATTTGGAGGACAGGAGTGTGGAACTGCAATGTTAATAGCAGATGTTGTAAGACTATCTTGTATGTACGTTGCTATATTTTGCTTATTACTAAACTGTTAACAAAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_024994945.1	4.0e-65	transcription factor MAMYB
Swissprot	Q9ASQ2.1	3.8e-44	Membrane-anchored MYB
trEMBL	A0A2J6L2E7	2.7e-63	Myb-like domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G45420.1	45.66	3e-50	195	maMYB	Duplicated homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G04036	AT5G45420.1	311	146	7	1	294	1	305	45.66	3e-50	195
AfisC1G04036	AT3G11450.1	179	85	3	158	294	466	644	29.05	5e-14	75.1
AfisC1G04036	AT5G06110.2	189	91	2	153	294	472	660	26.98	8e-14	74.7

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	240	282	28.7	9.7e-07

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005783	C	endoplasmic reticulum
GO:0005488	F	binding
GO:0034645	P	cellular macromolecule biosynthetic process
GO:0034654	P	nucleobase-containing compound biosynthetic process
GO:0048767	P	root hair elongation
GO:0050794	P	regulation of cellular process
GO:0090304	P	nucleic acid metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network