Detail information of AfisC1G04233


Location
GeneChrStartEndStrand
AfisC1G04233chr1785100857785113896-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020261976.14.8e-234LOW QUALITY PROTEIN: probable serine/threonine-protein kinase At1g54610
SwissprotF4I114.11.3e-162Probable serine/threonine-protein kinase At1g09600
trEMBLA0A6I9QJA74.4e-205probable serine/threonine-protein kinase At1g54610

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G53050.153.003e-174 608Protein kinase superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag113741.t1
Allium fistulosumAfisC1G04233
Allium sativumAsa7G04737.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00069.22PkinaseDomain146430235.65.5e-70

Gene Ontology
AccessionOntologyName
GO:0005886Cplasma membrane
GO:0000166Fnucleotide binding
GO:0002944Ccyclin K-CDK12 complex
GO:0002945Ccyclin K-CDK13 complex
GO:0009615Presponse to virus
GO:0005829Ccytosol
GO:0005615Cextracellular space
GO:0005730Cnucleolus
GO:0005794CGolgi apparatus
GO:0006397PmRNA processing
GO:0007346Pregulation of mitotic cell cycle
GO:0008353FRNA polymerase II carboxy-terminal domain kinase activity
GO:0016607Cnuclear speck
GO:0019908Cnuclear cyclin-dependent protein kinase holoenzyme complex
GO:0030097Phemopoiesis
GO:0030332Fcyclin binding
GO:0043405Pregulation of MAP kinase activity
GO:0043410Ppositive regulation of MAPK cascade
GO:0043484Pregulation of RNA splicing
GO:0044822Fpoly(A) RNA binding
GO:0046777Pprotein autophosphorylation
GO:0048366Pleaf development
GO:0070816Pphosphorylation of RNA polymerase II C-terminal domain
GO:0097472Fcyclin-dependent protein kinase activity

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K08819CDK12_13; cyclin-dependent kinase 12/13EC:2.7.11.22 2.7.11.23 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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