result

Gene information

Detail information of AfisC1G04281

Location

Gene	Chr	Start	End	Strand
AfisC1G04281	chr1	792486083	792490235	-

Sequences

CDS

Protein

Gene

>AfisC1G04281
CTGAAAGCGACGACTCTTTCTCGCGCCTCCTCTATATTATTTTGTGGGAGAAATTTTGCGCTGGATTCGTTCATCAAACCCTAGCTACAACGTAAGCTTTTTATTCTCCTAGCCGCATTTTTATGTATAATTGTTTGATTTCTTATGTGGATTTGATTGATTTATTGTCGGTGTACTGATCCGATCCTGTTTCTCTTATTCGATTTCAGTTGCTAGTAATTTTATAATTCTTTTGTTTGGTTTGGATCCATTTACGCGGATGTAGTTGTTGAATCCTCAACCCAGAGAATGATTTTGATTTTTTTTCGTATGTTATTGGAAGATTATAATGCCGATTTAGATGCAGTGAACAGATCAGTTCGATTTACAACTTCAGGGAATGTTGATTTATTTATATTTATTTTTTGATTGCAGGCAGTTGAGTTTGGATTGAATGGATCAGGTGGGTACTTAAGTGATTTTACTGAATTTTGTGTGCGCTTAAATAGCGAAGTAGTGATTTCATGTTTTGAAAGTAATGCGAGTGATTTTTGTGCATTATTAGTATGAGAAAGTGGAGAAGATTGGAGAAGGAACTTATGGAGTTGTTTACAAAGCACGTGATCGGCTGACTAATGAGACGATTGCTTTGAAGAAGATTAGGTTGGAGCAGGAAGATGAGGGAGTTCCTAGTACTGCCATTAGAGAAATATCACTGTTGAAGGAAATGCAGCATGCTAACATTGTCAGGTTATTGCTTTTGTGATTTGTGCATTTCTGTTCGTGCAGAATAAGGATGTTTTTGTTTTGCAATCAGGTAGAAGAATTAGTTGTTCTAGTTTGGTTAATAGATCTATGTTATTATTAAATGCAATAAACACAATTTTGTTGTTGGTTAGATTGTTTGAAACAGGTCACTGATTTAGTACTCAGATTTATAGCACATATTATTGCTGTTTAACTGTATTAACAGGTCATATATGCTAATTTAATACTGTGATTGGACATACCTCAGATTAAGATGATATTTATGCTACTTTATCGTTGTCAACACCTATTCGATTTACCTCAGCTAGAAAAGCGAATGCTTACTGAAGGGGCAATGAAAACTCATATAACTAGTGATTTATTGATCTCCGGTTGTTTACTGATAGTTACCTTACATTACTTAAATTGCCTTGATAATACATGGGTGTAGCATGAACTACCATTGCTCACAGGCAGCTATAATATCAGTTGTCATTACACTAGTTCACATAGAGAGCAAAAGTAAGGAATGTCTAATGTCCTGGTAGTTGAAGTTTTGATAAAATAGCTTCATGAAGCATTCTGAATGTGTGAATTTGGATTTCATTTTTTTCAATCTATATGTTGGTAAAGCATCTGTATACATTTGTCTATGTCGTTCTAGTCATTCTGTATACATTAATAATCTGTATGCTAATGGCCTATTGAATTTCTATCCTCTTTTTGCTTATTTAGATTTTTTATTTTGACCATTTGCAAGAAATCAGTTTATTAATGGCCAAAAGGTTCAAGGTTGAGGCAGTCTATGATATTCTTTTTTGCGAGCATTTATTGTTGGCATATTTCTTTTGGAAATCTATTATAAAATTTGTAATTGTACTGTCATCTTTTCCACCTTCATATTGGAGTTGCCAGTAATTAAGCTTAAAAGAAGTTGTGTTAAATGACCTGAACAATTTTGGCATGCCAGGCTGCAAGACGTAGTTCATAGTGAGAAGCGAATATATCTTGTGTTCGAGTATCTAGATCTGGACCTTAAGAAGCATATGGATTCATGCCCAGATTTTGCTAAAGATTCTCGTTTGGCTAAAGTAAGTTCTTCTTTGCAGTCATGATTCATAGTCAAACAAAAGCACCACACCCCCTCCCATCCCTCAATACCTTCACTCCGTCACACACATATTTGGTCTTTGAAACGCCAAAGTGAGAACTGTTACCTTTAGATGAGATCATATTTGTTTTGAAATTTAACAATCGAACGCCAGCATGATATTGTATTATTGTTGTTGGTTATTCCCCTTCGTGCTTTACGTTTCTTCATGCTAAAGCCTTTAGTAAAATTTATTATTCAATGAATTCAGGTATTGATTGTAGCCTTTCTTGTTTAACGGTCTTATTCTTTTTACCTTTTGCAGACATTTCTCTATCAGCTTCTCCGAGGAATTGCTTATTGTCACTCGCACAGAGTTCTTCATCGGGACTTAAAACCTCAAAATTTATTGATCGACAGACGTACCAATTCATTAAAGCTTGCTGACTTTGGACTTGCAAGGGCATTTGGTATCCCAGTCCGAACCTTCACACACGAGGTAGCATTATGATCCCTATGTCTTCCCCCTGATCGCAGTATAGCTTAGTATATCATCAGTAAATGTTATACTTCGTCATATTTTATTAAATTGAACATGGTAATTGTTCACACTGGTTGGTTTGTCTTTTCTTTTGAGATGCCCAGCTTTAACAGCTACATTATATTATATTTCTATGTATATCTTAGCAAGCAATTTAGAAACAATAGTTTACTTACATATGTGCTCCTCTTAGGTTGTGACACTGTGGTATAGGGCACCTGAAATCCTCTTAGGTGCTCGTCAGTATTCTACTCCTGTAGACATATGGTCTGTGGGATGTATCTTTGCTGAAATGGTGAACCAACGACCTCTATTTCCTGGGGACTCTGAGATCGACGAGCTGTTCAAAATATTTAGGTTCAATAATATTATCCCCATGATCTATGTTTGCATCATTGAATTTTGGAAGATGCTTATTCTCATTTTATATATATTTTTTAAAGAATTATGGGCACCCCAAACGAAGACACATGGCCAGGTGTTACTTCCTTGCCCGACTTCAAGTCTGCTTTTCCAAAGTGGCCAGCAAAGGTGCTAAGCAAACTTTTTTTTCAACCTATGTTTTCTTCAAAAAATAGATTTATGTTAACCTGAATTTTTAAATTGATTCTCTCTATGCAGGACTTGGCAACAATAGTTCCAAAGCTTGATTCAGCTGGAATTGATCTTCTTTATGTAAGTTTGGTATCTTATACTGATATCTAATCATGCTTCTTATTGCAACTCATTCCGGCAAGGGCATACTTAGTGGTTTTCAAGTTATTTTCCCAACAGATAATTGAGAAGATTTATAGAATATACAGCTAATGAAGGTAGGGGTATTGGAGATCATGGATTACAAAAAGTTGGGCAGGCAACACTATTTACTGTTGGGATATACAAATTATCAAACTTGTATATAATTGCTTAGAAAAATTAGAGTGATTTGTGCAAAATGTTAACATCCCAGAACAACTACGAAGATCTAGCATCACTCTCCCATAGAGATTGATACAACATTCTCCCATTTATTGGTTGAGAATGTAATCTAGCAATTCTCTTCGCATTGTGATAGTGATGAATGTCTAGACATTGAAAGTATGTACCTATATTCTGAGTAGTGAGTAGTCTCACAATTATGTTACCAGTATAATCATTTCTTTCAGACAAAATTTAGCATTATTATGAGCAGCCAAATCAAACATAGTGCATTAATTTGACTAAACCTGTTTGCTTTGTTAATGAGACGGCATAAAAATGAATGTGAACGCCATCATTCCAGACGCTGTTTTCACGTATTAGGTACTGTGTTGCATCTATATACATCTGCTATACTTTCATAACAACAATGGCTTCTAATGCTTTATATGTTTGCCTACCATCCTGTTATTTATGCTTTATATGTTTGCCTACCATCCTGTTATTTATTCATAACAACAATGCCCGTTTATTGATACAACCTGTTATTTATTTGTTCTCACTGTTATATTTGTATGCAATCAGAAAATGCTGCACCTTGAACCGAGCAAAAGAATCACTGCTCGGAAGGCTCTTGAGCATGAATACTTCAGGGATCTTGGGACAATTCCATGAAAAAACTGAGCACATCCTTCCCCATTGTATATTATTATGACCATTGCATCAACCTTTGCAGATTGGTATGTTTGAGTGCCGTCCTTTGTTATCTTTTGGTTTTTTATTCAATCTTATTCTAGTTTGTGTGTTTTAGACAGCTAGGGTTATCCTTATGTTGTAGAAAATACTGTCTTCATCTTTTTTGCTTCGTTTTCCTTACTGTTGTGTGTTCTAAAAGACAA

Functional annotation

Database	accession number	e-value	annotation
nr	BAA21673.1	1.9e-168	cdc2 kinase
Swissprot	Q38772.2	5.6e-157	Cell division control protein 2 homolog A
trEMBL	O22292	1.4e-168	Cdc2 kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G48750.1	85.71	2e-151	531	CDC2;CDC2A;CDC2AAT;CDK2;CDKA1;CDKA;1	cell division control 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G04281	AT3G48750.1	294	42	0	1	294	1	294	85.71	2e-151	531
AfisC1G04281	AT1G20930.1	298	124	5	1	290	13	309	55.37	9e-96	346
AfisC1G04281	AT1G76540.1	298	130	4	1	290	11	307	53.36	2e-94	342

Ortholog group

Species	Genes
Allium cepa	g495101.t1
Allium fistulosum	AfisC1G04281
Allium sativum	Asa4G06413.1
Arabidopsis thaliana	AT3G48750.1
Oryza sativa	LOC_Os02g03060.1; LOC_Os03g01850.1; LOC_Os03g01850.2; LOC_Os03g02680.1; LOC_Os03g02680.2; LOC_Os03g02680.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	4	287	267.9	7.9e-80

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000086	P	G2/M transition of mitotic cell cycle
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0000793	C	condensed chromosome
GO:0000781	C	chromosome, telomeric region
GO:0000805	C	X chromosome
GO:0000806	C	Y chromosome
GO:0002088	P	lens development in camera-type eye
GO:0005829	C	cytosol
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0046872	F	metal ion binding
GO:0005524	F	ATP binding
GO:0005667	C	transcription factor complex
GO:0005768	C	endosome
GO:0005813	C	centrosome
GO:0006281	P	DNA repair
GO:0006813	P	potassium ion transport
GO:0006977	P	DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007067	P	mitotic nuclear division
GO:0007099	P	centriole replication
GO:0007265	P	Ras protein signal transduction
GO:0008284	P	positive regulation of cell proliferation
GO:0008353	F	RNA polymerase II carboxy-terminal domain kinase activity
GO:0008356	P	asymmetric cell division
GO:0042493	P	response to drug
GO:0009636	P	response to toxic substance
GO:0009409	P	response to cold
GO:0009555	P	pollen development
GO:0009574	C	preprophase band
GO:0009793	P	embryo development ending in seed dormancy
GO:0010005	C	cortical microtubule, transverse to long axis
GO:0010235	P	guard mother cell cytokinesis
GO:0010444	P	guard mother cell differentiation
GO:0015030	C	Cajal body
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0016572	P	histone phosphorylation
GO:0018105	P	peptidyl-serine phosphorylation
GO:0046686	P	response to cadmium ion
GO:0030332	F	cyclin binding
GO:0030448	P	hyphal growth
GO:0030496	C	midbody
GO:0031100	P	organ regeneration
GO:0032298	P	positive regulation of DNA-dependent DNA replication initiation
GO:0032355	P	response to estradiol
GO:0032403	F	protein complex binding
GO:0032869	P	cellular response to insulin stimulus
GO:0035173	F	histone kinase activity
GO:0040020	P	regulation of meiotic nuclear division
GO:0042023	P	DNA endoreduplication
GO:0045023	P	G0 to G1 transition
GO:0045471	P	response to ethanol
GO:0051436	P	negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051591	P	response to cAMP
GO:0051602	P	response to electrical stimulus
GO:0060968	P	regulation of gene silencing
GO:0071732	P	cellular response to nitric oxide
GO:0072686	C	mitotic spindle
GO:0097123	C	cyclin A1-CDK2 complex
GO:0097124	C	cyclin A2-CDK2 complex
GO:0097134	C	cyclin E1-CDK2 complex
GO:0097135	C	cyclin E2-CDK2 complex
GO:0098725	P	symmetric cell division
GO:1901796	P	regulation of signal transduction by p53 class mediator

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K02206	CDK2; cyclin-dependent kinase 2	EC:2.7.11.22	FoxO signaling pathway	ko04068
			PI3K-Akt signaling pathway	ko04151
			Cell cycle	ko04110
			Oocyte meiosis	ko04114
			p53 signaling pathway	ko04115
			Cellular senescence	ko04218
			Progesterone-mediated oocyte maturation	ko04914

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network