Gene information

Detail information of AfisC1G04398

Location

Gene	Chr	Start	End	Strand
AfisC1G04398	chr1	811203454	811203751	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_030459300.1	4.8e-39	lysine-specific demethylase JMJ25-like
Swissprot	Q9SSE9.1	2.0e-34	Protein JUMONJI 25
trEMBL	A0A059AW35	1.0e-38	JmjC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G00990.1	66.67	4e-38	152		Transcription factor jumonji (jmjC) domain-containing protein

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G04398	AT4G00990.1	99	33	1	99	455	553	66.67	4e-38	152
AfisC1G04398	AT1G11950.1	90	26	10	99	576	665	71.11	3e-37	149
AfisC1G04398	AT1G62310.1	90	25	10	99	594	683	72.22	4e-37	149

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0000785	C	chromatin
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0001047	F	core promoter binding
GO:0001666	P	response to hypoxia
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0005506	F	iron ion binding
GO:0005737	C	cytoplasm
GO:0005654	C	nucleoplasm
GO:0016491	F	oxidoreductase activity
GO:0007290	P	spermatid nucleus elongation
GO:0008584	P	male gonad development
GO:0009555	P	pollen development
GO:0009908	P	flower development
GO:0030521	P	androgen receptor signaling pathway
GO:0031490	F	chromatin DNA binding
GO:0032454	F	histone demethylase activity (H3-K9 specific)
GO:0032776	P	DNA methylation on cytosine
GO:0033169	P	histone H3-K9 demethylation
GO:0036123	P	histone H3-K9 dimethylation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0046293	P	formaldehyde biosynthetic process
GO:0048366	P	leaf development
GO:0050681	F	androgen receptor binding
GO:0051573	P	negative regulation of histone H3-K9 methylation
GO:0060969	P	negative regulation of gene silencing
GO:0070919	P	production of siRNA involved in chromatin silencing by small RNA
GO:0080188	P	RNA-directed DNA methylation
GO:2000036	P	regulation of stem cell population maintenance
GO:2000736	P	regulation of stem cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network