result

Gene information

Detail information of AfisC1G04443

Location

Gene	Chr	Start	End	Strand
AfisC1G04443	chr1	817652218	817653524	+

Sequences

CDS

Protein

Gene

>AfisC1G04443
ACTCTTTCACAATTTTGCCTTTACATTTGCTCAATCACATTGCAGAAAAGGGCAGTAAATTCATCTTTTCAGATACATATAATATTTGTATATATAGTTAAATACACACAATGTCTTTCAGCGGAACCCAAGACAAATGCAAAGCCTGTGACAAGACTGTGCATTTCATCGACTTGGTGACTGCAGATGGCGTCAATTATCACAAAACTTGCTTTAAGTGTAGCCATTGCAAAGGAAATCTAACTGTAAGCATTTTGATACATTATTGTTTGCATATTTCACCTTCTCCAAATATTCATATATTACAACGTATGCATGCATGTTTCTTGTCTAGATGAACAGCTACTCATCCATGGATGGTGTTCTTTACTGCAAGCCTCATTTTGAGCAGCTTTTTAAAGAAACAGGATCCTACAGAAAAAACTTCCAAGCTCGTAAGTGATCGTATTATGTTAATGAAATTTTTATTACTGTTTTATAACTAATTTATGTGTTAATTATGATATTTCTTTTGTTGCCCAGCACCCAAGTCCGACAAAGAATTGGTAATGTTGCTACATATCAATTTGCACTCTTTGGTATAAAAGTTTAAAATCAAGATTATAAGAATGACTTATAAGTTGCTTGCAATTCACAGAATAGGACACCGAGTAGAGTACAGTCCATGTTTTCTGGCACGCAGGACAAATGTTCAGTTTGCACCAAGACAGTATATCCTCTAGAAAAAGTGAGTTCATCTTAGTTTTTTCTTCAAATGAAAACAAAAGTGTACATGTAAAATTCTGTGCATGTGCGTGCATATCATGCACAAGATTGTATGGTAGTGAAACTAATATATAGATAATGCGGTGAATGAACAGATAACTGTAGAAGGGGAAAACTATCATAAAACGTGTTTCAAATGTGCGCCGGGTGGATGTACATTAACGACATCAAATTATGCGGCATTAGATGGAATATTGTACTGCAAGCATCACTTTGCACAATTGTTCAAAGAGAAGGGAAGCTACACTCACTTGACCAAAACTGCTTCTATGAGAAAGCATTCGTCGGAGGCAGTTGTACCGCCAGAAGTGGATTTGACAGTGCCGTTGCCAGCAGAAACTGAACCTGAGGCAGCCTCCGAGAATACCGAGACAACGGCTGAGACATCTGAGACAACTGAAGAACAGTCATAGAAACAGTTTTTCTATAAAATACTTAAACATTTATCATTCTTTTCTTGTGTTATAGTTATGTTTTCTTGTATTACTGGAGATGAAAATAATACTTGTACTTTACATGTGATATAATGATGATAATCGTTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008796793.1	4.2e-83	LIM domain-containing protein WLIM2b-like
Swissprot	Q9M047.1	4.3e-77	Widely-expressed LIM protein 2B
trEMBL	A0A8B7CDD5	3.0e-83	LIM domain-containing protein WLIM2b-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G55770.1	70.17	2e-75	278	WLIM2b	GATA type zinc finger transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G04443	AT3G55770.5	181	50	2	1	177	1	181	70.17	2e-75	278
AfisC1G04443	AT3G55770.4	181	50	2	1	177	1	181	70.17	2e-75	278
AfisC1G04443	AT3G55770.3	181	50	2	1	177	1	181	70.17	2e-75	278

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00412.19	LIM	Domain	10	65	48.4	7.5e-13
PF00412.19	LIM	Domain	104	159	41.8	8.4e-11

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0001725	C	stress fiber
GO:0003281	P	ventricular septum development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003729	F	mRNA binding
GO:0051015	F	actin filament binding
GO:0051017	P	actin filament bundle assembly
GO:0003785	F	actin monomer binding
GO:0005634	C	nucleus
GO:0005925	C	focal adhesion
GO:0008270	F	zinc ion binding
GO:0030018	C	Z disc
GO:0030835	P	negative regulation of actin filament depolymerization
GO:0031529	P	ruffle organization
GO:0032154	C	cleavage furrow
GO:0045216	P	cell-cell junction organization
GO:0051393	F	alpha-actinin binding
GO:0055008	P	cardiac muscle tissue morphogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09377	CSRP; cysteine and glycine-rich protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network