Gene information

Detail information of AfisC1G04533

Location

Gene	Chr	Start	End	Strand
AfisC1G04533	chr1	831935401	831935890	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	KAF3333639.1	3.2e-43	DNA-directed RNA polymerase II subunit 1-like protein
Swissprot	P18616.3	5.7e-45	DNA-directed RNA polymerase II subunit 1
trEMBL	A0A834W506	1.6e-44	DNA-directed RNA polymerase subunit

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G35800.1	78.26	3e-46	179	NRPB1;RNA_POL_II_LS;RNA_POL_II_LSRNA_POL_II_LS;RPB1	RNA polymerase II large subunit

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G04533	AT4G35800.1	115	19	1	1	109	325	439	78.26	3e-46	179
AfisC1G04533	AT3G57660.1	75	41	0	1	75	415	489	45.33	9e-15	75.5
AfisC1G04533	AT5G60040.2	90	50	1	8	94	348	437	41.11	5e-13	69.7

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00623.17	RNA_pol_Rpb1_2	Domain	29	108	60.6	1.8e-16

Gene Ontology

Accession	Ontology	Name
GO:0000398	P	mRNA splicing, via spliceosome
GO:0000974	C	Prp19 complex
GO:0001055	F	RNA polymerase II activity
GO:0003677	F	DNA binding
GO:0006353	P	DNA-templated transcription, termination
GO:0005665	C	DNA-directed RNA polymerase II, core complex
GO:0005730	C	nucleolus
GO:0006283	P	transcription-coupled nucleotide-excision repair
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006367	P	transcription initiation from RNA polymerase II promoter
GO:0006368	P	transcription elongation from RNA polymerase II promoter
GO:0006370	P	7-methylguanosine mRNA capping
GO:0008543	P	fibroblast growth factor receptor signaling pathway
GO:0031047	P	gene silencing by RNA
GO:0031625	F	ubiquitin protein ligase binding
GO:0033120	P	positive regulation of RNA splicing
GO:0035019	P	somatic stem cell population maintenance
GO:0042795	P	snRNA transcription from RNA polymerase II promoter
GO:0044822	F	poly(A) RNA binding
GO:0050434	P	positive regulation of viral transcription

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network