result

Gene information

Detail information of AfisC1G04541

Location

Gene	Chr	Start	End	Strand
AfisC1G04541	chr1	833188549	833189596	+

Sequences

CDS

Protein

Gene

>AfisC1G04541
CTTCCCTCACCCCTCATTCAATTCATTCTTCTCCAATTTCAATTTTCCCAAAGCTGTGTCCTTCACAAATTTCACCATGGATCATGAAAGAATAGATTTAAACAATACTGTTATCTGTCTTCCTCTCATCGACATGATCGGTGTCAAACCCGAAGTTAAAGAAGAAAACAGATTCAACCATATGAAAGAAGAAAAGGAAAAAACTAACATGGCTTTGCAGCTTGGCTTACCTGGAACAGTTGCAATAAATTTGGAAGATGAAAGTCAGTCCTTCAGCAATGATACATATGTCAGTGAAGAGTCTGATAACAGCGATATTGGTAAGTACTGGATACCTACTCGAACTCAGATACTTATCGGTCCAGTTCAGTTCACTTGCCATGTCTGCACCAAAACCTTCAACCGTTTTAACAACATGCAGGTATCATATTTTTAACTACCATAACATATATACTGTTTTGTCATCTGAATCTGCATATTTTGTTAGTATTTCATAAATTATGTTTATATAGATGCATATGTGGGGGCATGGATCAGAATACAGGAAAGGATCAGATTCCCTAAAGGGAACACAAGGGACAGCAATAGTGAAGCTTCCATGCTACTGCTGCGCCATAGGATGCAAAAACAACATAAACCATCCTCGAGCGAAGCCATTAAAAGACTTCAGAACACTGCAAACGCACTACAAAAGGAAGCATGGGACGAAGCCATTCAAGTGCAGGAAATGCAGCAAGCCATTTGCTGTCAAAGGAGACTGGCGAACACATGAGAAGAACTGCGGTAAGTTGTGGTTTTGCATGTGTGGGTCACAGTTCAAGCATAAGAGGTCGTTAAATGATCATGTTCGATCCTTTGGCCTTCATCATTCGCCCTTTTCTCCATCATATTGATATCATTGACTCTATATATATGACACCCGGAATAAGTTAAAGGATAATTTGAGGATTTGATCAGTGTTGTAAAGTAGCTGAATTTTCTAGCATCACGTTGGAGAAAATTTTACAGCTTTACACACAATTTAAGTTAATTGTATACTACATAATTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263851.1	2.7e-88	zinc finger protein WIP3
Swissprot	Q9SGD1.1	9.5e-78	WIP-domain protein 3
trEMBL	A0A5P1EZE4	2.0e-88	C2H2-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G08290.1	55.47	2e-77	285	WIP3	WIP domain protein 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G04541	AT1G08290.1	256	82	5	8	236	68	318	55.47	2e-77	285
AfisC1G04541	AT3G57670.1	185	58	1	53	237	173	355	67.57	5e-75	277
AfisC1G04541	AT1G13290.1	220	72	5	23	240	36	244	61.36	5e-75	277

Ortholog group

Species	Genes
Allium cepa	g46923.t1
Allium fistulosum	AfisC1G04541
Allium sativum	Asa7G04419.1; Asa7G04422.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003676	F	nucleic acid binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005635	C	nuclear envelope
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006997	P	nucleus organization
GO:0008270	F	zinc ion binding
GO:0009813	P	flavonoid biosynthetic process
GO:0009860	P	pollen tube growth
GO:0010087	P	phloem or xylem histogenesis
GO:0010305	P	leaf vascular tissue pattern formation
GO:0010500	P	transmitting tissue development
GO:0010588	P	cotyledon vascular tissue pattern formation
GO:0048364	P	root development
GO:1990058	P	fruit replum development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network