result

Gene information

Detail information of AfisC1G04566

Location

Gene	Chr	Start	End	Strand
AfisC1G04566	chr1	835890412	835893649	-

Sequences

CDS

>AfisC1G04566
ATGGAGATGAAAACCGAGCTTCATAACAATGCAACATATACTGCTGATGTTCTAATCCGAACTTCCAACGGCGTTAAAATCCCTGCTAACTCTACTGTTCTGGCTTCTGAATCGAAGGTGTTTGAAGAACTAATTCAGTGGAGGAAAAAAAAGGGAAAGATTGGAAAAGATATTGCTGTTTTGGGTGTTCCTTCTCCTGCTGTTGCTGCTTTTCTTCTTTTGCTTCACTCTAAAAGATGTGAGGAAGGGGAACAAACAGAAATGATGGAAAAATATGGAATGCATCTAATGGTGCTATCGCATGTATATCAAGTACCCTGGCTCAAGAAAATATGTGAAGTTGAACTTGGTTTACGACTAACTGTGGATTCAGTAGTCGATTTGCTGTTACTGTCAAGGCAATGTGACATGCCTAAACTATACTTGCAATGCATGAAGTTGCTTCAAAAAGACTTCCCTGCTGTTGCGAAAACCGAAGCCTGGAGTTTTCTTCAAGAAAATGATCCTTGGTTTGAGCTTGAAATCCTTCAATTTCTCGAAGACGAGGACTTGAAGGAAAAGAGGAGGAGAAGGAAGATGGAAGAGCAAAAGGCGTACCAGCAACTAAGTGAAGCAATGGAGTGCGTGCAACACATCTTCTCTGAAGGATGCACTCACATCGGCCCTTACAATAAATCTAAACCATCAAAGAAGATGGAGTCATGCCCCAAATACAACACTTGCCAAGCTATTCAACTCCTCCTTCAACACTTGGCTTCTTGTAGATCTAAGAGATCGACTTGTTATAGATGTCGTAGAGTGTGGGACTTACTTCGCCTGCATTCGTATGTGTGCGACTTGGATGATCATCAATGCAAGGTTCCTCTATGCATGGAATTTAAGAGAAGGAAGCAAGTAGGCAGAAATGTCGATAGCGAGAGATGGAAGGTTCTGGCAAAGAAAGTTGCCTCTGTCTATGTGATGTCGTCGTTGGCTAAGAGGATGAAGCATGATTTGAAGGTGGAACGAAATGATAGCGTTTGA

Protein

Gene

>AfisC1G04566
CTTCGCCCCTTTCTCTATACATAAATACCACAGCAACCTCTCCCTCTTCGTATCATAATTAGCTCATAGTCGATGGAGATGAAAACCGAGCTTCATAACAATGCAACATATACTGCTGATGTTCTAATCCGAACTTCCAACGGCGTTAAAATCCCTGCTAACTCTACTGTTCTGGTACGCCATTATTTTCTAAGTTCTTTAATTGTTTTATGTTCATTATAAACCATGTTTTAATTTGATGGGTTAAGAGTAGTTACAATGTATTATCTAAGTTCTCTTTCTTGGTCTATATAAAGGCTTCTGAATCGAAGGTGTTTGAAGAACTAATTCAGTGGAGGAAAAAAAAGGGAAAGATTGGAAAAGATATTGCTGTTTTGGGTGTTCCTTCTCCTGCTGTTGCTGCTTTTCTTCTTTTGCTTCACTCTAAAAGGTATTCTTTTTAACCCTTCTTACTGCCTCAGTTCCCTTCTTTCCTTCTAGAAGAAAAAATGAGAGCTCTTGAGCTCTCCTTTGAGCAATCTGATTTTTTGGGTTTTCCTTTGAATTATCTATATGTTCGCTCAGAATAAGATGTGCAAATTTTAAACCTGAATTGAATGAATCATAAAACTTACAGTTTAAATTTTTTATGTTCAAACAGTATAGTTTCAGCTTTGTTCGCGTGGGTTTCTTGATAGATTCTTATGTGCTCTCTCAGATTGATAGCCAAACATTTAATAATAATGGGCAGAAATCTATTTAAGTCCTTGTTAGCAACTTATATTTCTGTTAGAATAATGAAGCACCATTCTTTTTGCAAATTAGACATTATTTCTTTGCACAATTTGAAAAAAAAGAAAAAGAGTAAATGAAAGTGTGATTTCCAATTCTCTGCGAATGTGATAAATTGTTTATAAGCTCTTCTAAATCAAAATGGACACATTTACTAACTTATAGCAACAAAAAATAACTTCACATGTAAATTTACCTCTTATAAGCAAAAATTTGAAGCCCATATATTAACAAGTGTAGCATTGATTATATTCATAAAGGTATCACCAAGAATATATGCCAAGAAGTAACAGATAGACCATGAATTTATTAATATAACCTAGTAGATGTAGCTTTCAAATAATGGTTGTACAAGTTTCATATGCTTAATTAATTAACTCTGAAAACGCGTTTTAGTGTCGATGGTTCAAAGTATATTGGAAGAAATCAAGATCTTCTAGAAGAAATATATAGTTTCCTTGTCAAGACTACAGAATCTTTTTTTCCCCTTGCCAATCAATTTCATTATTTTTTGATAATAATACAGAACAATTTAAGCCAGCCAGTACAACCTCATTCAACACGCGTTCACTTAACAAGTAGTCTGCAAGGTTGCATTCTACTTCTAAAACAGTTTCAAAATTTTAGCTTAGCATGTACGTTTTGCAGTAAATGTAATTTGCACAAATTTTGTACAGATGTGAGGAAGGGGAACAAACAGAAATGATGGAAAAATATGGAATGCATCTAATGGTGCTATCGCATGTATATCAAGTACCCTGGCTCAAGAAAATATGTGAAGTTGAACTTGGTTTACGACTAACTGTGGATTCAGTAGTCGATTTGCTGTTACTGTCAAGGCAATGTGACATGCCTAAACTATACTTGCAATGCATGAAGTTGCTTCAAAAAGACTTCCCTGCTGTTGCGAAAACCGAAGCCTGGAGTTTTCTTCAAGAAAATGATCCTTGGTTTGAGCTTGAAATCCTTCAATTTCTCGAAGACGAGGACTTGGTATGATCATTTACAAAACATATCAATTTCACATGTTTTCTTTCTTGCTAGTAACTGAGAATTGATTTGCGCTAATTCAGAAGGAAAAGAGGAGGAGAAGGAAGATGGAAGAGCAAAAGGCGTACCAGCAACTAAGTGAAGCAATGGAGTGCGTGCAACACATCTTCTCTGAAGGATGCACTCACATCGGCCCTTACAATAAATCTAAACCATCAAAGAAGATGGAGTCATGCCCCAAATACAACACTTGCCAAGCTATTCAACTCCTCCTTCAACACTTGGCTTCTTGTAGATCTAAGAGATCGACTTGTTATAGATGTCGTAGAGTGTGGGACTTACTTCGCCTGCATTCGTATGTGTGCGACTTGGATGATCATCAATGCAAGGTTCCTCTATGCATGTGAGTTGTTTTTTCTTGATATGCTTATTGTTGATTAGAATGTAAATGTACTTTTGAAGTTGTTTTTAAGTTTTGAATGTGTGGAATATGCAGGGAATTTAAGAGAAGGAAGCAAGTAGGCAGAAATGTCGATAGCGAGAGATGGAAGGTTCTGGCAAAGAAAGTTGCCTCTGTCTATGTGATGTCGTCGTTGGCTAAGAGGATGAAGCATGATTTGAAGGTGGAACGAAATGATAGCGTTTGATGGTTTGCAGTTTAATATGTAGCTATTTGCTTCATATGAGCTCATGTATAGTAGCAAAACCGCATAAGGGGTGAAATGTAGAATGTGTGTTGGAAAAGATTAATCAAGTCAGAGTCTGTAAGAGTTGAGCTGATTTTGTAAACAAAGATATTTCAACCCTTTATGGTTTATATTCTCAACATATGGTTGGGCGTTTCATCTTGTGTGAGAAAATTACGTGTGGCTTTGAAAAAATGACCTTGCTTCAGGAAAATTACGACCTTTCCCATTCTTTGGCCTGGCATCTCATACACCAAACCCAGATTTCCAAATCCAAAACTACTATTTCAGTACTATGTGATCCATTATTTTTGTTTTCTTTATGTTTTGTTTTGATTTTTGTTGCGCGCTTGTTTGTAACACCTTGTATATTATACGATTTGCACATTTTCCGACTAGCCTATGAAGATGAGCATATATTCCAGTAAACGTCATTTAAAGTTAAACGACGCAATCAAATTGTGATCAGAGTACCACAACTCATAATGGAAAGAAATAGTAGAAAGAGGATCATGACTAGAAGAAGGGGCTAAACTAGCTAGGTGGAACACGGTAAAGTTCCAAACCGTTGTTTGACATACGAAGATGGTGGCAAGAAGACTAACAAACCCATCAATGGAAAGTCACATTTGAACTTGAAGATCAGAACCAACATTGAATAGGAGGACATTTGAGTCATGGAGAAGGTGGAGATAAGTGGTGGTAGAAAGTTGTAACACACTGTAATTTTGCGTTAATTATTTAATTTGTTAGTTAGTTAGTTAATTAGGTTTCGAAAATGGAATTTGTAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263843.1	1.9e-111	BTB/POZ and TAZ domain-containing protein 1-like
Swissprot	Q9FMK7.1	2.2e-64	BTB and TAZ domain protein 1
trEMBL	A0A5P1F332	9.2e-108	TAZ-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G48360.1	43.62	1e-69	259	ATBT2;BT2	BTB and TAZ domain protein 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G04566	AT3G48360.1	337	173	7	6	330	25	356	43.62	1e-69	259
AfisC1G04566	AT5G63160.1	316	156	6	15	321	25	335	46.20	5e-69	258
AfisC1G04566	AT5G67480.2	310	174	10	10	315	66	365	39.35	8e-54	207

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00651.28	BTB	Domain	13	116	33.4	3.8e-08
PF02135.13	zf-TAZ	Family	203	290	36.3	5.3e-09

Gene Ontology

Accession	Ontology	Name
GO:0005516	F	calmodulin binding
GO:0016567	P	protein ubiquitination
GO:0005634	C	nucleus
GO:0005774	C	vacuolar membrane
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006511	P	ubiquitin-dependent protein catabolic process
GO:0007623	P	circadian rhythm
GO:0009409	P	response to cold
GO:0009553	P	embryo sac development
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009734	P	auxin-activated signaling pathway
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0010167	P	response to nitrate
GO:0010182	P	sugar mediated signaling pathway
GO:0010200	P	response to chitin
GO:0042542	P	response to hydrogen peroxide
GO:0051973	P	positive regulation of telomerase activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network