Detail information of AfisC1G04572


Location
GeneChrStartEndStrand
AfisC1G04572chr1836562876836568644+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_008797141.10.0e+00LOW QUALITY PROTEIN: lysine-specific demethylase JMJ705-like
SwissprotQ5N712.11.4e-253Protein JUMONJI 705
trEMBLA0A8B7CE740.0e+00LOW QUALITY PROTEIN: lysine-specific demethylase REF6-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G48430.149.590.0 861JMJ12;REF6relative of early flowering 6

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag94387.t1
Allium fistulosumAfisC1G04572
Allium sativumAsa7G04381.1
Arabidopsis thalianaAT3G48430.1
Oryza sativaLOC_Os01g67970.1; LOC_Os12g18150.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02375.14JmjNFamily265949.42.9e-13
PF02373.19JmjCDomain221340128.81.2e-37

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0000785Cchromatin
GO:0046872Fmetal ion binding
GO:0005654Cnucleoplasm
GO:0007276Pgamete generation
GO:0007623Pcircadian rhythm
GO:0009741Presponse to brassinosteroid
GO:0009826Punidimensional cell growth
GO:0009909Pregulation of flower development
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0030154Pcell differentiation
GO:0032453Fhistone demethylase activity (H3-K4 specific)
GO:0033169Phistone H3-K9 demethylation
GO:0034720Phistone H3-K4 demethylation
GO:0035067Pnegative regulation of histone acetylation
GO:0040010Ppositive regulation of growth rate
GO:0043565Fsequence-specific DNA binding
GO:0045815Ppositive regulation of gene expression, epigenetic
GO:0048366Pleaf development
GO:0048513Panimal organ development
GO:0048581Pnegative regulation of post-embryonic development
GO:0048585Pnegative regulation of response to stimulus
GO:0071558Fhistone demethylase activity (H3-K27 specific)
GO:1902494Ccatalytic complex
GO:2000028Pregulation of photoperiodism, flowering
GO:2000242Pnegative regulation of reproductive process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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