result

Gene information

Detail information of AfisC1G04614

Location

Gene	Chr	Start	End	Strand
AfisC1G04614	chr1	843392626	843396895	+

Sequences

CDS

Protein

Gene

>AfisC1G04614
ATGGAGCTATCAGTTTCATTGACCATCTGCCTCACATTGTTCTTCTCAGGTATTTAGCTTCTTCGCTTGTATGATTGATTTTAATAATTCCAACATTAATCTATTTGATAACTTATTCTTAGCGTTAATATTCAATGACAGATTAAGTTAAATTATTCGATTTGGTTTTTTTTGACTTTTGGTTGGATTCGAGTATTGGGTTTTTTTTTGACTTCTGGTTGGAAGTCCACGTTTACAAAATCTTTCTTTTATAGCTTGATAAATTCTTTTATCATATTTTTCACTTTGTACTATTATGATACATAATCAAAAACTTTCTAATAGCACGTTCTACTCGATCATTGTTTATTGTTATTATATTCTTATTTAGTTGGGTTAAAAAGTTGAAGTAGTCTGCTATAACCACTTAGAAATTTGGTTATCTTAAGAAAATTATATCGCATCTCAACAATCTTTTTAGAGGATTGAATAATCATCCTATAATAGTTACTAATAAACATCGGTTAATGCCATAATACGTTTCAAGAGTACCACGTCAGCGGCTCATGCAGAAGCCAACCACCGCCACCTCAACGGAGGTGAGTACCACGTTGATTGCGTACTGGTGGGTCCCCTTCGCAGCCAGACTGGCAAGGACCGAGTCTGTGAGTGACTTTCCTAAAGAGTAGGACTCGTCTTGGAACTATTTTCCTAGGGTCAGTTTGGGCATTCGGGTTTTTGACTCCGTGAAATATTTTTCGATCGTTTTGAACTAGGAAAACATTGGGTGCTTTCTTCGGTCTTCAATTCTTCTCCTGGTCTTTCTAGCGGTCGATAGAACCATGTCTTCACATGATCCTGCCAGCACTCCTTATAGTGACAATTAGGGATAATGTTATTATGCTTCACATTTACCTTCCCTACAGAGATGACCAAACCTTAGTTGTCACAAATATGTTTGCTTTTGGTTGGAAGTGATTTGAATTGAATATTACTCTGCATATGCTATAAATGGAAATGTATATAGTTTTAATAATTTTCTGTTGTAATAAACAAATATACTTATTCATCCCATTTGATTACTTTGTTTTTATGTTACTGGCCTCTAAAATTTTCAGTTCTATGGAATATAGAACATCACTTGTGTGAATATATTATAGTTATGTCTTTACATGTGTGGCATTGTCGATGAAACCGATCAATAATGAGGTTTTTCTTATCATAGTGATGCAAATCAAAACTCTTCGAACCCAAAATATCTAGGGAATTTTTTTTTTGTTTTTAGAAAGCTTGTTTTCTTAATTATCATCCAAGGTACCTACTTAATTTTCTCTACGAACCTCCCAAATAAATTTGTGTGCTACACTACCGCTATGTGTAGTATCAATTTGTTTATGAGAAGGTACAATATTGGTTCAAAAAAATCACGAGTTTAATTTTCTATATATAATATTAATTTGCGATATTGTATTTTTTTTTGAAAAAATGTACTTTATATATAACAATAAATAAGGGTTACAAATATTTGTTCGTGCTCCAACAAGTGTAAAAGGCAAATACAACTGTTTCACACTTCATCATTAATAAAATAAATAAAAGCACCGCAAAAAGGGAAGTCTGATATTGTATATAGCAAAGAAAATTGTTTCTCCATTTTTCCCTCATACCTTTTCTCACCAGCTTATTAGAACCATCAAATTCATAACAACCAATTCATTCTGTCAAACGACTTTCTTAGTACAACATAATTTTTTCATCATCAACCAATTCATTCACTAGTTTTGTTTTTAGCACGTCTATAATGTCTATAAATTCTCTTTTATAGTATCTTCTTGATTTTTTTCATGAACCTTCCAAATATATAACATTTTTTTAAACATGGTTATTTAGTGCCAACATGTGCCAGTTTTGGGCTTGGACTCGTGGCTTTTAGTCTCAAAGTTCAAAACATCAACTAACTTAGTTATCTTTGTTGGCTTAAATAAATAATGATAAAATCATATATTTATTGCTTTAAATAAAATGTTAATAATTTTGAGAAATTCATTATATTTTTTGGACAAATATTATTTCTCGAGAAATTCAAATATCATTAAAAAATATCAAATATTTCAAATAGTTTTTGAAGAAAAATTTCAAGTTTTAGTAGGAAGTTATTTTTCTTGAAAACACATTTTTTCCAGAGAATTTCATAACTTCTCAAAAAGATTTAAAAAATCTCAAATAAACCTCTGTTGAGAATTACATTTTTTACGTTTTTAATGCAATTGACTGAATAGTGTTAAAAAAATCCATCCATCGGTTTCTACTGTCGCATGGTAGTACTAGTAGTCAAAAATTTGGTCTTTGTTAACAGCTTATTTTATGTGGTTACATAGGGAACATATGCATATCAACAGGAAGAAGTTACCACGCACAGTTTCAATAACTTATCAATAACTTTGGATTTGAGGATCCTTTTGCTGTAACATTGCTCATTAAGTTTATATTTTTTGCTTACCATGAGTATTGCAATTTTCTACTTCACAGCTGCACAATTGGTAGGTCGCACTGATGCTCAGTGCTTGCATAGATGGAAGAAGGTTTTAAATCCTGAACTAGTTAAAGGAGCTTGGTCTAAAGAGGTATATAGATTTTCCCATATTTTAATATGATTTTGCATGAAAATTTGCACTGTACTTTAAATGCATTAATTATTAAACAAATCAGTAAAGAAAATTTAACCACTCTGAAGATTTGAACAAATATGTACTTCTTAAATTTTTTTAACACGGTTAACTAGTGCCAACAAGTGTTGGTTTTGGAGACTGAACTCGTGGCTTTGGTCCGAAACACCAACCAACTAAACCCTGTTGGTACTATTATTATTTCTTTGCTTGCTGAATCAAAACATCATCAGTATTCTTTGTCAAGTAACATTGAACTGCTTATATTAACTATTTACAAATATTAATAAATGTTTATCCTGATTATAATATCATTAATGTTACTTCAACTTTTTTTCAATTTGTAACTAAACGATTTTAATTTTATCAATCTGCTTATACGTGTCTTTAGGTGGCATAATCATCTCAATCCTTCAATAAACAAGAAGCCATGAACTCAAGCAGACGAGATAACACTAATTCATGCTCATGATGTGCTCGGAAACAAGTAGGCAGAAATAGCCAAGTTACTACCTGGAAGGTTAGAATTTACAATATAGCACTATGGTTGCTTTTGTAGAACTGAGGAAAACCATGCTAGGCCTATAAAATCATAGGGAGATGTGTCAAAAGCCCCAAATTTCAGGAAACTAACAAAAAGGTTAATGTTGTCATTAAGCTTTGAAGAACCTGTCACCTAATTCTCATCTTGGTTTTCTGATAGATGGGCTGACTTTTGGGAAAATCAATCAAACAATCAATCAACATATCAATGAAAACTCTAAGATGAAGTACGGTTTACGTGTGGGGGGACTAGTGAGTTTTCGGTAAAAGTAAGATTACATCAAAGATCGACTCTAAGTCCATATCTACCTGATTGGTCTGGGATAAAAAAATGAAGGAAAAAATGGAAAAATAATCAAAAGGATGTATCAAGGTATATGATGTTTTTATATGATATTATTCTAGTTATTACCTCAAAATAAAAAAAATAAAAAAAAAGTTAGAAAAATGAGGAAATACATTAGAGTCAAAAGGGTTAAAAAACCCACTAGAATCAAACTGAGTATGTGGCATGCAAGTTCAGTAAGGAAACTAGAGTTAACAATACAATTAAGGTAAAAGAGCATATGATTAACAAGAAAGATAATTTGAATATCTTGGTTTAATAATGCAAGAAGATGAAGAAATAGACAAAAACAATAAACAAATCACATTAACACAGGTTAATATAACGGAGACAAATAAATTACATCTTATTTGTTTCCTTCACCAAATATATTAAATCATATTTACGGCTGAAATAAAATGCTTACTGTTCATATTGCTTTCCTGCTATACAACCAGGCTCTTCATTCTATGATAGTCTAATGGCTTCAGTTCCTCCATCCTATGTGTCTTTAAACAATGATGAACCTGCATGTAAAGATTAGGTTGACGTAGGCAATTTTGTAAACTGCAGCTCGTCATCACTACCTGCTGCTTTGGATGACCAAAATGAACTAGACACTCCAAATTTTTCCCAAATAGATCCATTGAATGAAGCATCAACAAACTCGAGTGAAAATACTACCTTTTCCAATTCAAATAATTCTTGTCCTGCAGCAGATGGCCCAGATCTTGGTGCTGTATTGTACCAACCATAG

Functional annotation

Database	accession number	e-value	annotation
nr	KVH91877.1	1.7e-06	Homeodomain-like protein
Swissprot	Q9S7G7.1	1.9e-07	Plant c-MYB-like protein 1
trEMBL	A0A103XJJ0	1.2e-06	Homeodomain-like protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G11510.1	48.28	8e-10	58.5	AtMYB3R4;MYB3R-4	myb domain protein 3r-4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G04614	AT5G11510.1	58	13	1	17	57	56	113	48.28	8e-10	58.5
AfisC1G04614	AT5G11510.2	58	13	1	17	57	56	113	48.28	9e-10	58.5
AfisC1G04614	AT4G32730.2	28	5	0	23	50	68	95	82.14	2e-09	57.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0051726	P	regulation of cell cycle
GO:0005654	C	nucleoplasm
GO:0006338	P	chromatin remodeling
GO:0016363	C	nuclear matrix
GO:0031523	C	Myb complex
GO:0043525	P	positive regulation of neuron apoptotic process
GO:0045624	P	positive regulation of T-helper cell differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:0090307	P	mitotic spindle assembly

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network