Detail information of AfisC1G04709
| Gene | Chr | Start | End | Strand |
|---|
| AfisC1G04709 | chr1 | 856097375 | 856103887 | - |
| Database | accession number | e-value | annotation |
|---|
| nr | XP_020259895.1 | 3.8e-116 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 54-like |
| Swissprot | Q6ZK57.2 | 4.4e-77 | Zinc finger CCCH domain-containing protein 54 |
| trEMBL | A0A8B7CJQ2 | 1.6e-113 | zinc finger CCCH domain-containing protein 18-like isoform X2 |
| TAIR id | % identity | e-value | bit
score | gene aliases | Short description |
|---|
| AT2G05160.1 | 38.08 | 3e-83 | 306 | | CCCH-type zinc fingerfamily protein with RNA-binding domain |
>>>Show top 3 blast result 
| Query id | Subject id | alignment
length | mis
matches | gap openings | query
start | query
end | subject
start | subject
end | % identity | e-value | bit
score |
|---|
| AfisC1G04709 | AT2G05160.1 | 541 | 264 | 16 | 3 | 487 | 1 | 526 | 38.08 | 3e-83 | 306 |
| AfisC1G04709 | AT3G52980.1 | 383 | 163 | 8 | 3 | 336 | 1 | 362 | 39.16 | 2e-70 | 263 |
| AfisC1G04709 | AT3G51950.2 | 388 | 181 | 14 | 3 | 358 | 1 | 337 | 31.96 | 2e-37 | 154 |
| Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
|---|
| PF00642.21 | zf-CCCH | Family | 135 | 157 | 22.1 | 9.6e-05 |
| PF12872.4 | OST-HTH | Domain | 182 | 260 | 53.4 | 1.7e-14 |
| Accession | Ontology | Name |
|---|
| GO:0003676 | F | nucleic acid binding
|
| KO | Name | Enzyme ID | Pathway | Pathway ID |
|---|
| - | - | - | - | - |