result

Gene information

Detail information of AfisC1G04726

Location

Gene	Chr	Start	End	Strand
AfisC1G04726	chr1	859284917	859286091	-

Sequences

CDS

Protein

Gene

>AfisC1G04726
ACCACGTTTACATTGGCCAATTTTAGTTTTGTACGCGTATATATACTCCAACTCTCCTTCTCATTTGCAGCAATTACGAATAAAAAGAGTAAACAGCCTCACAAAGAAGAAGAAGAAGAAGAAGAAACTGTAAACATAATTCATAACCCATTTAAACAATGGTGAGAGCTCCTTGCTGCGAAAAGATGGGACTGAAGAAAGGGCCATGGACTAAAGAAGAAGATCATATTTTAACTTCATATATTCAAAGATATGGCCATGGCAATTGGAGAGCTCTTCCTAAACTAGCAGGTATATACAAATGATATACACGAATACATGATATACTTTAATTGGTCTTGATTTCTTGATTATCTAACATGCATTTGATTTTTTATAACAGGTTTGCTCAGGTGTGGTAAAAGCTGCAGGCTTAGATGGATAAATTATTTAAGACCTGATATCAAAAGAGGAAACTTTACCCCAGAGGAAGAAGACATGATTATCAGTTTGCATAAGGTTCTTGGAAACAGGTAGACATACATACCCTTTTATAACATTTGATGTATATGTTATAATTAATGACTATGTGAACTAACTTAATATATGATAAAAACAGATGGTCTGCAATAGCAGCTAGACTGGCACCAGGAAGAACAGACAATGAAATCAAAAATGTATGGCACACTCACTTGAAGAAAAGAGCCAACTCTACTACATCAATGAAACAAGAGTTTACTCAAAATAATACTGCAGTGGAAACAGTGAGTTCGAGTTCACATTCATCGCTGAGCAATAATTCATCGAAAGATCATGAATACACCGAGTCTTCTTCGGTTGATGAAGCCATTGATGATAGTTTTTGGACTGAAACTTTGATGATGAATGAAGGTTTTGGAAATGTCAGTGAAGATGATTGGAGATTGAATGCTACTAACGAGTTGAGTGGGGAAGAAGATATTGATTATTGGTTCAAATTTATTGCAGAAGCTGGGCAATTTCTTGATTTGCCAGAACTGTAACAGATGTTTACGTCAAAAATTCAAGTGTAATTTTGTAAGAAGTAAAGAAAGTTTAACCTTGTTTCTTTTTTATTACAATTCAATATGATTTATTACTAATGCATGTTGAGCGAAGATAAAAATTGTACTGATCATCCACTGATGCCCACCTTAATAAGTTTTGTTTAATTGTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250172.1	5.3e-62	myb-related protein Myb4-like
Swissprot	Q6K1S6.1	4.5e-58	Transcription factor MYB30
trEMBL	A0A8T3ACF2	3.8e-62	Myb-related protein Myb4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G23250.1	46.45	3e-61	231	ATMYB15;ATY19;MYB15	myb domain protein 15

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G04726	AT3G23250.1	282	86	6	1	218	1	281	46.45	3e-61	231
AfisC1G04726	AT1G06180.1	248	97	6	1	221	1	246	49.19	6e-61	230
AfisC1G04726	AT2G31180.1	251	95	7	1	221	1	249	49.40	6e-60	227

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	56.5	2e-15
PF00249.28	Myb_DNA-binding	Domain	67	113	50.0	2.2e-13

Gene Ontology

Accession	Ontology	Name
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009411	P	response to UV
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009809	P	lignin biosynthetic process
GO:0009845	P	seed germination
GO:0009866	P	induced systemic resistance, ethylene mediated signaling pathway
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043565	F	sequence-specific DNA binding
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0071281	P	cellular response to iron ion
GO:0071732	P	cellular response to nitric oxide
GO:0080091	P	regulation of raffinose metabolic process
GO:1900384	P	regulation of flavonol biosynthetic process
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network