result

Gene information

Detail information of AfisC1G04878

Location

Gene	Chr	Start	End	Strand
AfisC1G04878	chr1	887046334	887047688	-

Sequences

CDS

>AfisC1G04878
ATGTACAAATCAAAACTCTATGAACTTTGCCAGAAGAGAACATGGTCCCTCCCAGATTACAACATTAGTCGTTATGGTCCCGATCATGATTTACGATTTTGTGCTAGTGTTCTCGTTAATGGTGTTCAGTTCAATGCTGAAGATCTCTCCAGATCATCAAAAGAGGCACAAAATAAAGTCAGCCAAGTGGCCTTAGAACATTTTTCCTCTGTTCTCCCGGAACCTTTACCTTCGTCCATTGGGCCTAGACATGCTTTACGCTTTAAGGCAGAAGTTACAGTTGGTGAAAGAACATTTCAGGGTACAACATTTTTTAGTACACTGAAAGAAGCTGAGCATGATGCTGCTAAAACAGCCTTGATGCTTTTGACTGCGGATGAAACTAACAATGCAAAGGATGATTCAGTATCATATAAGACTCTTTTAAATGATTTTGCACAAAAAGCGTGCATAAGTATGCCTAGTTACAAGACTAAAAGTAATGGTCTGGATGGTTTTTCTTCCATTGTTGATGTTGGAAACAGTAGTTTCTTTGGTGACGTTGCAAAATCTAAAAAGCAAGCTGAGAATAACACGGCTAAAGTTGCTTGGTTAAAACTCAATGAAGGACATGGTGCTGATTATGGTAACGATATCCAATTTTCTAGTTCTCCAAAGCATGTTTCTTTGATTACTTATCCAACAGTTAGCCAGAATTTGGAGGAATCACCTAGTACTGAAAATTATAGTGGAGCATGCTTAGATGACAAAAGAAACAATGATACAAAGAAGGAGTGCTTTCGAAGACTTTGGCCCTTGGAAGATGAGATAAAACTATTGAACTCCGTTCTTAAATTTCGTTTGGAAAAGGGTAAAGATGTGGACCCTTCTACTTTGGAATTATTTTGTAATTTCTTGAAAGATAAACTAAGTTTCACTGACAAGCCTAAGAGTAGCCAAGTATCAGAGAAGATCAGGGCTTTGAAAAACAAGTATTCTGAAAATACAGTGGACTGTTTTATTGCAGAACACGATTTGAAAATGAAAAAGATTGCTAGTCAGGTCTGGCTGGTTGAGCTAAGGTGTAACCCTAGAAAAAGGAAGTACCCTTTGGTGGAGGAAGAGGAAAGTTGA

Protein

Gene

>AfisC1G04878
ATGTACAAATCAAAACTCTATGAACTTTGCCAGAAGAGAACATGGTCCCTCCCAGATTACAACATTAGTCGTTATGGTCCCGATCATGATTTACGATTTTGTGCTAGTGTTCTCGTTAATGGTGTTCAGTTCAATGCTGAAGATCTCTCCAGATCATCAAAAGAGGCACAAAATAAAGTCAGCCAAGTGGCCTTAGAACATTTTTCCTCTGTTCTCCCGGAACCTTTACCTTCGTCCATTGGTGAGTCTATCTTGCATATAGGCCCTTTGTTAATTTATCATTACTCTTTATCAATTGGTTTTAAATCAATTAGTTTTCTATATAAAATGCACTTATTTAATAGTTGTATTTTATTTTTATTATATTATATGATATTTTATGTTAGGAGCTAGCAGGAGTAATCTTCATTTTAAGAATCATCTACAAGAGTATGCCCTAAAGAATTATTTTGTTCTACCCAACATATTCATATGCATGTGAAGGGCCTAGACATGCTTTACGCTTTAAGGCAGAAGTTACAGTTGGTGAAAGAACATTTCAGGGTACAACATTTTTTAGTACACTGAAAGAAGCTGAGCATGATGCTGCTAAAACAGCCTTGATGCTTTTGACTGCGGATGAAACTAACAATGCAAAGGATGATTCAGTATCATATAAGACTCTTTTAAATGATTTTGCACAAAAAGCGTGCATAAGTATGCCTAGTTACAAGACTAAAAGTAATGGTCTGGATGGTTTTTCTTCCATTGTTGATGTTGGAAACAGTAGTTTCTTTGGTGACGTTGCAAAATCTAAAAAGCAAGCTGAGAATAACACGGCTAAAGTTGCTTGGTTAAAACTCAATGAAGGACATGGTGCTGATTATGGTAACGATATCCAATTTTCTAGTTCTCCAAAGCATGTTTCTTTGATTACTTATCCAACAGTTAGCCAGAATTTGGAGGAATCACCTAGTACTGAAAATTATAGTGGAGCATGCTTAGATGACAAAAGAAACAATGATACAAAGAAGGAGTGCTTTCGAAGACTTTGGCCCTTGGAAGATGAGATAAAACTATTGAACTCCGTTCTTAAATTTCGTTTGGAAAAGGGTAAAGATGTGGACCCTTCTACTTTGGAATTATTTTGTAATTTCTTGAAAGATAAACTAAGTTTCACTGACAAGCCTAAGAGTAGCCAAGTATCAGAGAAGATCAGGGCTTTGAAAAACAAGTATTCTGAAAATACAGTGGACTGTTTTATTGCAGAACACGATTTGAAAATGAAAAAGATTGCTAGTCAGGTCTGGCTGGTTGAGCTAAGGTGTAACCCTAGAAAAAGGAAGTACCCTTTGGTGGAGGAAGAGGAAAGTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	KAE8713296.1	1.8e-38	Double-stranded RNA-binding protein 4
Swissprot	Q9C517.1	3.3e-05	Storekeeper-like protein At1g66420
trEMBL	A0A8B8ZQK4	8.6e-43	double-stranded RNA-binding protein 1-like isoform X3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G62800.1	40.91	2e-18	90.5	ATTIF3K1;DRB4	double-stranded-RNA-binding protein 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G04878	AT3G62800.2	132	72	2	81	209	29	157	40.91	2e-18	90.5
AfisC1G04878	AT3G62800.1	132	72	2	81	209	29	157	40.91	2e-18	90.5
AfisC1G04878	AT3G62800.3	133	73	2	81	210	29	158	40.60	2e-18	90.1

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00035.23	dsrm	Domain	2	67	35.2	1.4e-08
PF00035.23	dsrm	Domain	73	120	27.6	3.2e-06
PF00035.23	dsrm	Domain	138	200	27.1	4.6e-06
PF04504.11	DUF573	Family	260	349	51.8	9e-14

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network