result

Gene information

Detail information of AfisC1G04946

Location

Gene	Chr	Start	End	Strand
AfisC1G04946	chr1	899611165	899613944	-

Sequences

CDS

Protein

Gene

>AfisC1G04946
ATGGACGGTGCTGCATCAAACTTCAGTGAACTTCAAGGTAACCCAAACAACCTTTTTAAATTTAAATTTGCAATTATTTTCAAAATCATGCCCTATATAACTATGCAAAAATCGTTTACTTACATGCATGCCTGTTAAGATTCACGTTTTATGCACTCGTATCGCCTGTGTATACACACACACACAGCGTTAGGGTCTTACAATTTTTTTTTCATAATCTTCTTTATGTTCTTTTATTTTTTGTTTTTGAAAACAGATTTTTTAGAGTATTTTGTTTAAAAGTCTGACATTTCTAGACTCTTTTAGCCAGTGTTTTGAACATCGGACGCAAACACGATTCAACCATGGTTAACCTTCTATTTTGGGGTTGTACCCTTTTCAAAATTAAATAATCCTAATTGTGCGTTAAACACTGATCTGATCTCCAAACTTTGAAAAACCTTTAGACCAACTTATTTTAACTACACGGTTAATCAAATTTTAGAAAAAAAAAAGGATCGCGTTATTTTCCATTTGTTTCAATAAACAATTTAACAAATATTTCATAGCCTTAGTCATCAAACATTGGTTTACCTTTTCCGTTCTGCACAACATAATACATTATTAATATATATTTTTATGAACCTTTGTTAAATTCTTCTTTTATCATGTAAAAAATGACGAACAACGTGGTTCTTACGGCTTGGTTTGTTGATTCACTACTTTTAATCTTGCACCGATACGGTTCGGTCTTCAAAACTACCCTTTTAGTGCTTTTTTTCAAATTTGAACAAGTTGGATGACTGGTTATTACAATTAACATGTACACCTTTGCTAAAGCTGAAACTGCTGGCATAGAAAGTATACAATATGTTTGAATTGGAGAGTTTTATAAATCTTGTTATAGCTTGCATCACATTTCAAGTCAAAGCTACTGAGTTGCAATTTTGTTACAGTTAAGTTTTTGATAACCTAGTTAGTCAGCATGAAGTATCCTAGAAAAAGTAACAGTGGTTGAATCCAGTAATGTCTTTTAATCGATTGTTACAAAAAGAACTTACTTCAGGTCACATGGAAACACTATATAGACCACTTTATGTCTTTAATTATATGCAAAATGACAAGTATTCAGCCAGTGCCGGCTCTAGACATTGGGCTGCCCCAGACGAGGCAGAAAAATATGGAGAAAAATGTTGCCCAGGCGAGGAAGAAAAAATTTACTTCTCTTGCAGAGAAACGAACACCAAATCTCAAGAAGAGCAAATAGATGCACAACCAACTGAGCTACTAAATCTTCATAAAATAGATTACATCAACATTTATTTATTTAAAACCTATAATTCATAATATTTTGAGTGGTTGTTGCCCCATCGAGGGGGGTTGCCCCAGGCGGCCGCCTGCTCAGCCTAGCCTCTGAGCCGGCCCTGTGTTCAGCCTATGTTATGTAACGCTCAAGAGTAATAACGTCTAAAATCAAAAGTAACGTTAGGGTGAGTATTAAACAACAGACTTGTGCAATGGTTGCAGCGTATACCTAATATGATATTTAAGCTAGTGTTTTATGTCGTTTTTAATAAATTATCTTGCTATGTAAAATTCCAAATATCCCGCACATAGGTTCGAAAAACATAGTTTTTTTTAGAAAAACATAATGATGTAAATTATCGTTTGTTCCACCATCACATATGTATTCACATTTCACATGTGAATGGTGAACTCAACATATTAGATAAGTCCACGCGTTATTTCAAATTAGTACAATAATGCACATATAATGATGCTACATCAAATATTGATAATGATGTTATATCAAGTATTTTTCACAATGATAAATTTGTGATGCCTTTGTTAGACCTCAATTTTTAACTACTGTGCAAAAAATTAGAATATGTATTTTATCTTTCCATTGATGAGTCCAAAAATATTTAAAGGTCAACATTATATCCAGAAATCATATAATTTATACATAACCAGGTTAATTAAATTTGAAGTAAAATAGACAGTAAGCAACTGGTTATCTGCTCATTAGTCCTGTATACGAGCATTGGATGGTTGAAGTAGTATGCTTTAAGCTAACATACTCATTTTAACTTTTCATAGAATTTCAACGTGTCTGATATTTCATTAGGTAATAACGTTGCATAAACACCCTTTCAGGAAACACCGCAACTGGCAGCACCGGTAACACCACCCCAAACGCCACCACCCCCAATCAATGCACTGTCCGTGAACAGGACCGGTACATGCCGATCACGAATGTGATCCGGATCATGCGGAAGGTCCTCCCACCACAAGCCAAGCTCTCGGACGATGCTAAGGACACGATCCAGGAATGTGTGTCCGAGTTCATCAGCTTCATCACGAGCGAGGCCAACGACAGATGCAAGCGCGAGCAACGCAAGACCATTACCGCCGAAGCTGTGCTCTGGGCCATGAACAAGCTCGGCTTTGACAACTACGTCGAGCTCCTCACCCCCTTCCTTCAAAAGTATCGTACCATGGAAGGAGATCACCGTGGTTCCATTAGAGGCGAACCTTCGTCTTTGAGAAGGAGCAGTGGCTCCTCGGTCTTGAATCCTTATGGGAGTGGAGCGGCGGATCCCTATGGGTTTCAGTATCAGACTATTAATAGCCAGCAGTATGGAATTTATGATGGCGTTAATATGGGAAACTATTACTATCCTACCTCTGGTTATGGTGGATCCGCTGCTCCAGGTGGTGATGGAAGTGGAGGAACCAGTGGAACTTCTCACCAGTCTGATTCTATTGATGGATTTGGTTCTGCTGCTAATTATAAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	ERN19273.1	7.3e-43	hypothetical protein AMTR_s00061p00216770, partial
Swissprot	Q9SFD8.2	4.3e-40	Protein LEAFY COTYLEDON 1
trEMBL	U5DFR7	5.3e-43	CBFD_NFYB_HMF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G21970.1	51.76	3e-46	181	AtLEC1;EMB 212;EMB212;LEC1;NF-YB9	Histone superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G04946	AT1G21970.1	170	76	2	1	164	21	190	51.76	3e-46	181
AfisC1G04946	AT5G47670.1	188	74	6	3	187	23	195	51.06	3e-45	178
AfisC1G04946	AT5G47670.2	166	59	5	25	187	14	166	54.82	7e-45	177

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00808.20	CBFD_NFYB_HMF	Domain	41	105	81.7	3e-23

Gene Ontology

Accession	Ontology	Name
GO:0000049	F	tRNA binding
GO:0000436	P	carbon catabolite activation of transcription from RNA polymerase II promoter
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0002098	P	tRNA wobble uridine modification
GO:0016887	F	ATPase activity
GO:0016602	C	CCAAT-binding factor complex
GO:0019760	P	glucosinolate metabolic process
GO:0032447	P	protein urmylation
GO:0032993	C	protein-DNA complex
GO:0033588	C	Elongator holoenzyme complex
GO:0043457	P	regulation of cellular respiration
GO:0046982	F	protein heterodimerization activity
GO:0070491	F	repressing transcription factor binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08065	NFYB, HAP3; nuclear transcription Y subunit beta	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network