result

Gene information

Detail information of AfisC1G04949

Location

Gene	Chr	Start	End	Strand
AfisC1G04949	chr1	899887244	899887780	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	ERN19273.1	4.3e-38	hypothetical protein AMTR_s00061p00216770, partial
Swissprot	Q9SFD8.2	1.9e-35	Protein LEAFY COTYLEDON 1
trEMBL	U5DFR7	3.1e-38	CBFD_NFYB_HMF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G21970.1	59.54	1e-39	159	AtLEC1;EMB 212;EMB212;LEC1;NF-YB9	Histone superfamily protein

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Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00808.20	CBFD_NFYB_HMF	Domain	1	64	81.9	2.7e-23

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0016602	C	CCAAT-binding factor complex
GO:0019760	P	glucosinolate metabolic process
GO:0032403	F	protein complex binding
GO:0032993	C	protein-DNA complex
GO:0043565	F	sequence-specific DNA binding
GO:0046982	F	protein heterodimerization activity
GO:0070491	F	repressing transcription factor binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08065	NFYB, HAP3; nuclear transcription Y subunit beta	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network