result

Gene information

Detail information of AfisC1G04954

Location

Gene	Chr	Start	End	Strand
AfisC1G04954	chr1	900731680	900732081	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	TEY93249.1	2.1e-34	hypothetical protein Saspl_028390
Swissprot	Q84W66.2	1.2e-34	Protein LEAFY COTYLEDON 1-LIKE
trEMBL	A0A2G9G7F1	1.5e-34	CBFD_NFYB_HMF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G47670.1	71.57	3e-40	160	L1L;NF-YB6	nuclear factor Y, subunit B6

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Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00808.20	CBFD_NFYB_HMF	Domain	39	103	89.3	1.3e-25

Gene Ontology

Accession	Ontology	Name
GO:0000049	F	tRNA binding
GO:0000436	P	carbon catabolite activation of transcription from RNA polymerase II promoter
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0002098	P	tRNA wobble uridine modification
GO:0005737	C	cytoplasm
GO:0016887	F	ATPase activity
GO:0016602	C	CCAAT-binding factor complex
GO:0019760	P	glucosinolate metabolic process
GO:0032447	P	protein urmylation
GO:0032993	C	protein-DNA complex
GO:0033588	C	Elongator holoenzyme complex
GO:0043457	P	regulation of cellular respiration
GO:0046982	F	protein heterodimerization activity
GO:0070491	F	repressing transcription factor binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08065	NFYB, HAP3; nuclear transcription Y subunit beta	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network