result

Gene information

Detail information of AfisC1G05049

Location

Gene	Chr	Start	End	Strand
AfisC1G05049	chr1	918975655	918976736	-

Sequences

CDS

Protein

Gene

>AfisC1G05049
ATGCTAGATTTTGATTCTATTTTATTACTGCAGATTGGACAAGGAACCTACATTACTGTATATAGAGCCCGTGATCTTCACGCTGGAAAACCCGTTGCGCTAAAAAAGGTGAGGTTCCTTAATATGGATCCAGACAGTGTTCATTTTATGGCAAGAGAAATAAATATTCTACGTACACTTGATCACCCAAATGTTATTAAACTCGAAGGCATCATTACATCAAAGACATCATGCAACTTGTATCTTATGTTTGAATACATGGAACATGATCTTACTAGACTTGCATCTACACTTGGTATCAAATTCACAGAGGCACAGGTATGGAATCTCGATAATCTACATTATCATCCTTTTAATGCCACTTTATATATATAAAAAAATTAAACTTCCAAGTATAATGCTTCATGCAACAGCTACTAAGTGGGCTTGATCACTGCCATAAGAATGGAATATTACATAAAGGTATAAATGCCTGTTGTAAATATCATTTTAGAATTTAAATGCCTTTATTTTGAAATACATAAATTAACGTGTACAAACTATAAAGAGTACGTAAAAGAACATTGAAAAGTGTGAGAAAATATAATAGAATCAAACATATTTAGTACTTAACATTGCAAATAACAAAGATACTGCGTATATACCACACGAAACTCAAACACATCCTACTAACATACAAGCAGCAAACCATACTTGTTTATATTATTAAAAAATACATATAATCTTACCTGAAACAATGTGTACTGTCTTGGAATTGATTCCTTTGAGCTGCCTTGAACGAAGAGAAGAAAAATCTGTACGATTTATAATATCAGATGGGTATACGTTGGAAAATATCCGTGCAACAGTTCAGCATTTCAAAAAGCACTAAAAATGTGCTGAATACTATTTTGATGGTTTGACTTGATACCATTGAATGAAATATTAAATCAAATGCCTAAATAAATGCTGAATTGAATCAGTACTTTAACAAATTCTTATTGCTCAAAACAAAAAGCGCCTTAATGCACGATAAACAGAAAGGAGGTGGCAAAGGGGTCACTATTGGCCATGCCTACAAGCCAGATTATGATCAAAACTAG

Functional annotation

Database	accession number	e-value	annotation
nr	MQM16066.1	1.8e-34	hypothetical protein
Swissprot	F4I114.1	4.3e-33	Probable serine/threonine-protein kinase At1g09600
trEMBL	A0A843X9Q5	1.3e-34	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G09600.1	72.45	6e-37	149		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G05049	AT1G71530.2	98	28	9	106	150	247	71.43	4e-37	149
AfisC1G05049	AT1G71530.1	98	28	9	106	150	247	71.43	4e-37	149
AfisC1G05049	AT1G09600.1	98	27	9	106	166	263	72.45	6e-37	149

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	11	107	60.2	1.8e-16

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0000278	P	mitotic cell cycle
GO:0000915	P	actomyosin contractile ring assembly
GO:0009615	P	response to virus
GO:0005829	C	cytosol
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005730	C	nucleolus
GO:0005844	C	polysome
GO:0006413	P	translational initiation
GO:0032786	P	positive regulation of DNA-templated transcription, elongation
GO:0018105	P	peptidyl-serine phosphorylation
GO:0030424	C	axon
GO:0030951	P	establishment or maintenance of microtubule cytoskeleton polarity
GO:0031124	P	mRNA 3'-end processing
GO:0045202	C	synapse
GO:0045903	P	positive regulation of translational fidelity
GO:0045943	P	positive regulation of transcription from RNA polymerase I promoter
GO:0048366	P	leaf development
GO:0051222	P	positive regulation of protein transport
GO:0051716	P	cellular response to stimulus
GO:0051932	P	synaptic transmission, GABAergic
GO:0051965	P	positive regulation of synapse assembly
GO:0070692	C	CTDK-1 complex
GO:0070816	P	phosphorylation of RNA polymerase II C-terminal domain
GO:1902803	P	regulation of synaptic vesicle transport
GO:1904799	P	regulation of neuron remodeling
GO:1904810	P	negative regulation of dense core granule transport
GO:1904811	P	positive regulation of dense core granule transport
GO:2000331	P	regulation of terminal button organization

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network