result

Gene information

Detail information of AfisC1G05059

Location

Gene	Chr	Start	End	Strand
AfisC1G05059	chr1	920987100	920990020	+

Sequences

CDS

Protein

Gene

>AfisC1G05059
ATGGACGGTGCTGCATCAAACTTCAGTGAACTTCAAGGTAACCCAGAGAACCTTTTTAAATTTAAATTTGCAATTACTTTACAAAATCATGCCCTAACTTTGTAAAAATCGTTTTGCTTAACATGCCTATTAAGGTTCACGTTCTACGTTTCACTTATATCACCAACATTAGTGTGCAAAGATTGCTTTGCTTACATGCTTGCCTGTTAAGATCCACGTATTATGTTTCACTCATATCACATACATTGGTCTGTTACAGTGTATACACATACACACACAGCATAAGGGTCTTGTAATGTTTTTTTTTATAACCTTCTTTGTGTTATTTTTTTTTTGTTTTTGAGATTTTTCAGAGTATTATGTTTAAAATTTTGACATTCTTGGACCATTTTAGCCAGTGTTTTTAAGACCCAATCCAACCACGATTCGATCACAATTAACCTCCTATCTTGGAGTTGTAATGTTTTCAAAATGAAAAACGTGCGTTAACCAACGATCTAAACTCAAAATTCTAAAAATCTTTTAGACCAACCTATTTGAACCACACGGTTCTTCAAATTTGAGAGGAAAAAAAAACTATGGTAGTACTTTTTATTTTTTTCACATGAACAAATCAACAAATATTTCATAACCTTAGTCAGCAAACTATTAGAGTAGTTTTGCATGATATGATACCTTATTAATATATTTTATGAACCTTTGTTAAATTGAACTTCTTTTATCTCATAAAATTAGAAAGTTAGCATTATTGCACTAAACAGTTACTATAGAATTTTAGTTTAATATTTCCAAAAATAATTGTTTTAAAAGTTTGATATATTAACTATAATTAGTTAAATTTATACATTAGTTTAAATAATTTTACATTTAGATCAGAAAAATAAAAAATAACCAACAATGTTTTTCTTACGGTATGGTTTATTGATCTACTGAAACCTTTAACCTTGCACCGACATGGTTCGGTCTTCAAAACTATACTTTTAGCACTTTTTTTCAAATTTGAACAAGTTAGGTGATTGGTTATAACAATTAGTATGCAGACCTTAGCTAAAGCTGAAACTGCTAGCTTAGAAAGTATACAATATGTTTTAATTGGAGACTTTTATAAATCTTGTTGTAGCTAGCATCACATTTTATGTGAAAGCTACTTAGCTGAAATTTTTTTAGAATTAAGTTTTTGATAACTTAGTCAGCAGGAAGTATACCAGAAAAAGGGAAAGTGGTTGAATCCATCAGGGTCTTTAACGTTGGTTACTAAAAAAAACTTGCTTAGGGTCACATGAAAAACACAATATAGACCACTTTACGTCTTTAATTAAATATGCAAAATAACAACTGATAAGCCTATTTTATGTAACGCTCAAGAATAATAACGTCTACGGTCCAACGTAACGTTTGAGGTATTAAACAACAAACTTGTGTACGTCATCTTTCCAAAAATTATCCTTATATGCTACAAACTTGTGATATCTTTTTTAAACCTCAATTCCCAACCACTATGGAAAAAATAGAATATAAATTTTATGTTTGGATAGATGAGTCCAAAAATAATTAAGATAAAAATTATATCCAAAAATCATATAATCTAATAACTAGGTTAAATTTGAGATAAAATAGATACTAAACAACTGGTTTATAGACTGTTGATCTCAATTACTGAATTTTCAATAATACGTCTATCTAGGATTGGCTGAAAAATGAGTCTGAAAAGAGAATAAACCTCAGACTAAAAAATATCAATTTCTAAAACTACACACTTCCTCTCAGTTATGCCTGGGTTTGATTCCGATTTATTATTCTAATTGTTGTGGATTGGTGCTTAATTAATGAGTATACTCAGTTTCTCATTCGTTTGTATTAAGCACATAGTTCTTTTTACTACATTTCCTGTGCTAGTTAGTGCTTACTACTAACTAACGTCACTAACTAACGTCACTTTCATGGGTTAACAATATCTTATTATCTTTATACAAAGTTTTATTCATTGTTGGATTGTGCATGACCATACACTAGTACAATGAACCAAACTGTGTGTGCACCTTAATTTATCTGCTCATTAGTCCTCTATACGAGCATTGGATGGTTTAAGTAGTATGCTTTAAGTTAACATGCTCATTTTGAAGCTTGAAGTTGATAGTAAAACCTGAAATCATAGTACTTTGAACATTACTACTAATAAAAGGGAACTGATTTCGTAGAATTTCAACGTGTCTGATATTTCATTAGGTAATAACGTTGCATAAACGCCCTTTTAACTTTTCTCGTTATCAACACTAGGAAACACCACACATGGCAGCACTGATAGCACCACCACAAACATCACCACCCCCAACCAATGCACTGCCCGTGAACAGAACCGGTTCATGCCGATCGCGAATGTGGTCCGAATCATGCGGAAGGTTCTCCCACCACATGCCAAGATCTCGGACGATGCTGAGGAGTCGATCCAGGAATGCGTGTCCGGGTTCATCAGCTTCATCACGAGCGAGGCCAACGGCAGATGCAAGCGTGAGCAGCGCAAGATCATTACCGCTGAAGATGTGCTCTGGGCCATGAACAAGCTCGGTTTTGACAACTACGTTGAGATCCTCACCCTCTTCCTTCAAAGGTACCGTACAATGGAAGGATATCACCGTGGCTCCATTAGAGGCGGACCTTCGTCTGTGGGAAGGAACAGTAGCTCCTCGGTCTTGAATCCTTGTGGGAGTGGAGCGGCGGATCTCTATTGGGTTCAGTATCATAATATGAATAACCAGCAGTATGGAATTGATGATGGCGTTAATATGGGAAACTATTACTATGCTACGTCTGGTTATGGTGGATCAGCTGTTCCAGGTGGTGATGGAAGTGGAGGAACTAGTGGAACTTCTCACCAGTCTGATTCTATTGATGGCTTTCGTTCTGCTGCTAATTATAAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	CAB4091881.1	1.1e-41	unnamed protein product
Swissprot	Q9SFD8.2	1.1e-38	Protein LEAFY COTYLEDON 1
trEMBL	A0A835UQL1	1.8e-43	CBFD_NFYB_HMF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G47670.1	56.41	6e-44	174	L1L;NF-YB6	nuclear factor Y, subunit B6

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G05059	AT5G47670.1	156	55	3	32	187	53	195	56.41	6e-44	174
AfisC1G05059	AT5G47670.2	156	55	3	32	187	24	166	56.41	7e-44	173
AfisC1G05059	AT1G21970.1	110	35	0	33	142	55	164	68.18	9e-43	170

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00808.20	CBFD_NFYB_HMF	Domain	41	105	80.6	6.7e-23

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005654	C	nucleoplasm
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0016602	C	CCAAT-binding factor complex
GO:0019760	P	glucosinolate metabolic process
GO:0032403	F	protein complex binding
GO:0032993	C	protein-DNA complex
GO:0043565	F	sequence-specific DNA binding
GO:0046982	F	protein heterodimerization activity
GO:0070491	F	repressing transcription factor binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08065	NFYB, HAP3; nuclear transcription Y subunit beta	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network