Gene information

Detail information of AfisC1G05226

Location

Gene	Chr	Start	End	Strand
AfisC1G05226	chr1	952767483	952768322	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020242536.1	1.5e-32	zinc finger CCCH domain-containing protein 54-like
Swissprot	O65036.1	1.5e-29	Tandem CCCH Zinc Finger protein 6
trEMBL	A0A8B8ZI78	4.9e-33	zinc finger CCCH domain-containing protein 67-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G07500.1	63.29	4e-29	122	AtTZF6;PEI1;TZF6	Zinc finger C-x8-C-x5-C-x3-H type family protein

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G05226	AT5G07500.1	79	28	1	53	131	51	128	63.29	4e-29	122
AfisC1G05226	AT2G25900.2	79	28	1	53	131	89	166	63.29	8e-28	118
AfisC1G05226	AT2G25900.1	79	28	1	53	131	89	166	63.29	8e-28	118

Ortholog group

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00642.21	zf-CCCH	Family	99	120	24.1	2.2e-05

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0000932	C	cytoplasmic mRNA processing body
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003727	F	single-stranded RNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006979	P	response to oxidative stress
GO:0008270	F	zinc ion binding
GO:0009409	P	response to cold
GO:0009793	P	embryo development ending in seed dormancy
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010150	P	leaf senescence
GO:0010187	P	negative regulation of seed germination
GO:0010200	P	response to chitin
GO:0010494	C	cytoplasmic stress granule
GO:0030154	P	cell differentiation
GO:0061157	P	mRNA destabilization

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network