result

Gene information

Detail information of AfisC1G05699

Location

Gene	Chr	Start	End	Strand
AfisC1G05699	chr1	1045070716	1045071786	+

Sequences

CDS

Protein

Gene

>AfisC1G05699
CACGATTCAGTATTGAGGGACGGCTGGTGGGCCCGGTCAAAACCCTCGTTGACTGTGCCGATTGTTTTCAAAATTTCACTCTCCACCACCCTTTTATTAATTTAATTTATTTTTCTCTTTAATCTCTCTCCCCTCTCCTCCCTCTATATATGGCAAGCTCATCCACATCCAAATCAAAATGCACGAGTTTTCCAAAATGGCACCCAAAACAGAATCTACCGCCGTCACAGTGGCCGCCGCCGCACCGTCGGCGAAAGCCACCGAAATCCGATTCCGAGGCGTACGGAAGAGGCCATGGGGCAGATACGCAGCGGAAATAAGGGATCCGGGGAAGAAGAGCAGGGTCTGGCTCGGAACATTCGATACAGCCGAGGAAGCCGCTAGAGCGTACGACGCGGCGGCGGTGGGGTTCAGAGGAGCGAAGGCGAAGACGAACTTCCCGATCGTGGAATCCAGCTTTCCGAGCAGCGCCAGCAGCACAGTGGAATCGTCCAGTCAGGACGCGGCGGCAATGGTGCCGCCGACTGTTGCGGTGGCGCTGCCGCCGTTCGATCTGTTCGGCCGTGGATCGAGGTATCCGTTCCCGATGATTGTGCCGCCTCCGCAGCCGTCGCAGCACTTGTTTTATTTTGATTCATTGTTTAGATCCGATAAGAATTTGTCGAAATCGGGTCGGATCCAGAGCGGAGTTCACAGTGAGTCCGATTCGTCGTCGGTGGTGGAAGTGGCGTCGCCTCGGCCGTTGGATTTGGATCTCAATCTGCCTCCTCCATCCGACGGTGTTTATTGAATGGTAACTGATGGTCACCTGGTTAGTTTCTTCGATTTATGTTTCTATTTTGGTTTTTTTTTTAGAATCGACTTCAAACCTGAATGTGCTTTTTGCATTTGGTTTTGGATCCCAGAAAAATGTTACGTTCTGATGTAAATTCTGTTAAGTTTGTGGTAGTAAACTGTAAAAATAAGGAAGATGAGGAGTGATTTGGACATCAAATTTTGTAAATAGGAAGTGGAAGTTTAATTCCGGTGATGTGATTTGTAACGTTTTCATTAATGGAGAAATATTGTTTC

Functional annotation

Database	accession number	e-value	annotation
nr	PKA52569.1	6.6e-35	Ethylene-responsive transcription factor 4
Swissprot	O80340.1	1.1e-29	Protein RELATED TO APETALA2 5
trEMBL	A0A2I0AAJ0	4.8e-35	Ethylene-responsive transcription factor 4

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G15210.1	67.68	8e-30	126	ATERF-4;ATERF4;ERF4;RAP2.5	ethylene responsive element binding factor 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G05699	AT3G15210.1	99	25	3	26	119	19	115	67.68	8e-30	126
AfisC1G05699	AT1G53170.1	201	80	7	7	200	6	185	46.27	2e-29	125
AfisC1G05699	AT5G44210.1	209	93	8	7	198	1	196	41.15	1e-28	122

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	31	75	48.4	7.6e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0051726	P	regulation of cell cycle
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0005730	C	nucleolus
GO:0009880	P	embryonic pattern specification
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009733	P	response to auxin
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009751	P	response to salicylic acid
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0010286	P	heat acclimation
GO:0010445	C	nuclear dicing body
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0031053	P	primary miRNA processing
GO:0034059	P	response to anoxia
GO:0043565	F	sequence-specific DNA binding
GO:0048825	P	cotyledon development
GO:0051301	P	cell division
GO:0070878	F	primary miRNA binding
GO:0071497	P	cellular response to freezing
GO:1900150	P	regulation of defense response to fungus
GO:0090708

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network