result

Gene information

Detail information of AfisC1G05719

Location

Gene	Chr	Start	End	Strand
AfisC1G05719	chr1	1048366489	1048372023	+

Sequences

CDS

>AfisC1G05719
ATGGGATGCTTTTCCCGTGATAAGTCATTAAAAGTTTCAGAAAAAAGCTGGAAATGTTGGAAAAGGAAATCATTAAACGAGAATGAAATGGAAAAAAGAAAGAGGAATGTGAGAGGATTAGCAAAAAGATTCAAAAGGAAAAAGAAACATGGAGCGAGATTAGAAAAAAAGTTGTCTTTGAAAGAAGAAATTAGCCTAAGCAGAAATAAACATACATCAGAGGTTCCATTAATTAGAAAACAAAAAGGGAAGAATTCTTTTTGTTGCTTTGGGAAATCAAAGATTGCTGAATCAAGCGAAGATGTATTTGATGTTGATGAACATGCAAAGTCAGCAAAGAGTGGTTTTAGTTTTTTCAAAAGATCGAAGAGAAAAGAGTCAAGTATGAAAGAAAAGCCCTTGAAAAAGAATCGTGGGAAAAAATTGATTGAGTCAGTCAGTTGCTTTTGTTGTTTTGGTTTGAGAAACATGAAATCAAGCAAGAAAATATTTTGCTGGAGACGGAAAAAGAAGGAGAAAATGGATAATTTAACGTCTTTAGTTAAGACCATGTCATTTAACTCAGATAGCGTCAAGCATAGAGGTGCAGCCGAAGAAATTCTACGTATAGGAAACGGAACTCTCACAGCACGAGCGTTTGCCTTTCGTGATTTAGCATCTGCAACCAACAATTTTGCACCACAAAATCTACTAGGCAAAGGTGGATTTGGAAAAGTTTACAAAGGAGTATTCCAAAATACAAACCAAGTTATAGCAGTTAAGAAGCTTGATAGAAATGGATATCAAGGAAACAGAGAATTCTTAATTGAAGTATTAATGCTTAGCGTTTTAAACCACCCGAATCTAATAAAATTGCTTGGGTATTGTGCTGATGGCGGTGAAAGGATTTTGGTTTATGAGTACATGAAACATGGGTCCTTACAAGAGCATCTTTTTGATTTGCCACCAAACACTAAGCCATTAGATTGGAACACGAGAATTAAAATCGCAGCAGGGGCAGCAAGAGGACTCGAACACTTACACGATACAGCAGACCCACCTGTGATATACCGCGACCTCAAAGTATCAAACATACTGCTCGACGAAGATTACAACCCGATATTAGCTGATTTTGGGCTAGCAAAAATAGGCCCAACAGGCCCAAAGAACCACGTATCAACACGTATCATGGGAACCTTTGGTTACTGTGCTCCTGAATATGCATTGACAGGGAGATTGACTAAGATGTCCGATATTTATAGCTTCGGAGTTTTGCTTTTGGAGTTGATTACTGGTAGAAAAGCCATGGACTTGAGTAGGCCAAGGAAGGAGCAGAGACTTGTTGATTGGGCTGCCCCGAGATTTCAGGACAGGAAGAATTTCGTCGAGTTAGCGGATCCGGGTCTGGGAGGCAATTTTCCGGTAAGAGGGTTGTATCAGGCTTTGGCGGTGGCTGCCATGTGTCTGCAAGAAGAGGAGACTAATCGCCCTCTCATTAAAGATATCGTGTTTGCTCTTCAGTTTCTTACTATGCCCGAAAATAGTACAGCTGAGGTTAAGTGTGATGTAGACTCCAAAGAGGAGGGAAATGGTAGTAGAGATGTTAACGATGATTCCATGCATAGTTTTCATAGTTTCCCGGACGTTGATGTTGATGTAAGAGAATGTGATTGA

Protein

Gene

>AfisC1G05719
ATAAAACAACCCAAAAACCAAATAACAATTTCCCCTTTCTCTAACATTTTGTTTTCCTTCTTCCTTCAACCCATGATTCATGTTTGTGTAGATTGGGCTTAGGAGTGATTACACTCTTTGGTCAATCCACATAATCCGATATTGTCATCATGGAGAATTGATAAATCCTTTAAATTTTGCTTAAAACCACATAAGAAAGAAGAGGAAGAAGAGAGTTATGGGATGCTTTTCCCGTGATAAGTCATTAAAAGTTTCAGAAAAAAGCTGGAAATGTTGGAAAAGGAAATCATTAAACGAGAATGAAATGGAAAAAAGAAAGAGGAATGTGAGAGGATTAGCAAAAAGATTCAAAAGGAAAAAGAAACATGGAGCGAGATTAGAAAAAAAGTTGTCTTTGAAAGAAGAAATTAGCCTAAGCAGAAATAAACATACATCAGAGGTTCCATTAATTAGAAAACAAAAAGGGAAGAATTCTTTTTGTTGCTTTGGGAAATCAAAGATTGCTGAATCAAGCGAAGATGTATTTGATGTTGATGAACATGCAAAGTCAGCAAAGAGTGGTTTTAGTTTTTTCAAAAGATCGAAGAGAAAAGAGTCAAGTATGAAAGAAAAGCCCTTGAAAAAGAATCGTGGGAAAAAATTGATTGAGTCAGTCAGTTGCTTTTGTTGTTTTGGTTTGAGAAACATGAAATCAAGCAAGAAAATATTTTGCTGGAGACGGAAAAAGAAGGAGAAAATGGATAATTTAACGTCTTTAGTTAAGACCATGTCATTTAACTCAGGTATGCATTTATGTTTTTCCTTCTATTTTTGAAAATTTTGTGATGATAATGTAGTTACATTCCCAGTAAGCAAGTTTTAATTGACTGTTACTTACAAACATATAATATTACTCGAATTCCTTGTCTCCAAGGAAAAGGAGAGTAATTTAAATTAGAGATTGCTGTTGATCGTGTCTGAATGAAGATGTACTAATGTATGACACTCACAAGGACAAATTTTGCATGTAAGCCCATAGAAAAACTAATTACAACAGGCTTTTTTAAAAAAAAACTTCAAAAACAAGTTCGGTGTTCAATTGGTTAGAAATTGTACCTGAACACTTTAAAAACACTTGGTGTTAAATGCACCCCAGTTTGTACTTCATATTACCTAATATTCATTTTACCCATATCTATTCGAGTACCTGCTCCATATTAAAACACACGTTGGAATGCATTTAGCGCTACCCTTTAGAAATGTGCAAATTCAATTTTAAAACCTTAACTTGCGCCGTTTTCAAGTGCACAGATTAAGATGATCTGGATTAATACTGAAACTGAAATTGAACTTGCACATTTCAAAATCCTCAAGCATCGCATAAATCTTAAAATCCTACATTTGGAATTTTGTTATAAATCAAATCTGTTCAATTGTTACTATTTGATTCTCAAACTCCAGTTCGAAATCCAATTAAAACAGCAATAAAAAAATCATTAAATCCACGTTAAAATAAAAAATCTCAAGATAATTACTTAAATTTAAAACTTAAAAAAAATTCATAAATAAAATAAAAATAGAACATGTGAAAAAAATAGTGTTAGTTTTGGATGTAGAAGCTCAAACATCAAAATGAATTTCAGTAATATAAACTATTACCATGAAAAACGGAATCTATGTTTTTTCCGCACTTAAATGTCATCTATTAACATTCACTGAGCAAATTTTATATCATACGAGTATGCATAAATTGAAATGCGACTCCTTTAAATCAACGATTTACAATATAAATCCAGTTTCGATTTAAAGCTTAAACTTTATGATTTAAATCTTTTAAAAAAAATCTTCCCCTCAAGTACAAATTCTGAAACAGAACTTGTGCATTTTAAAGTGCTCATGTACAGTTTCAGATCAGTTGAAACCATACATATTTCTGCAATAAATTTTCAAGTAAATTTATTGTTGCAATTAGTTATTTCGTATAGACTTATTTGTAAAATTTGTCCCACACGCAATGTGCACTGCGTGCACGTGATGTAAAAATGTACCATGCATAACGTGATGTAAAAATGTACGTACCATGCATAATGTGATGGAAAAGTGCAAGTAGAATATGAAAAATCGAAAGGGTATTTATATAACATTGATGAGGGGCTAAACGACACACAACGGTGAATCTTACTCAGTCGGTTTCCCTTGTTAACACACTCACATATTGGCAGATCTACATGGAGTCCAGTGGGGGCTTCCTCCCCCACTGAGATTAAGTCCACTTAGATGCAATATTTTATATTGGATAAGATGTGCAATATCTTTTGTTAGTGTACTATTGGTAAAATACTCATTTGCTGTATATTCATTGGCAAAGCTGAAGAAACTTTTATATAATGTCGTCCTTTAGGTAAAGTAAAGGTGGAAATGATAACAACTCACTACACTTTTGTAGAGCTGAACAATTCAATACATTAAAAAGGGATACAATGATGTTATAGATAAAAAGAAATATTCTTATCAGTGAAGGGGATAAAGAAATGTAATGAGTCATTCAGCTTCACATGTAACCATCTGGCAGTATATTTTCTTCATAGTATTCGGCCCACTAATGCAATTCATTGTCTCTCTAGCCTCAATCTTTTAACTGCTTTATCTTTCCATGCGTATATGCGCGCATGCTTAAAATAAAAATAATAAAAGATAAATAAATAAACCTTAAGTACTACTGCATGCAAAAGATTGAGGTGAAATATACTAAATTTTGATTTTGCTTATGGTCAGATTTATCATTTCGTCAAGCTGACATCGTCAATAAGCTTTATAAATTTTGCACTGAAGTACTACTGCATATATAATTATATTTACAGATAGCGTCAAGCATAGAGGTGCAGCCGAAGAAATTCTACGTATAGGAAACGGAACTCTCACAGCACGAGCGTTTGCCTTTCGTGATTTAGCATCTGCAACCAACAATTTTGCACCACAAAATCTACTAGGCAAAGGTGGATTTGGAAAAGTTTACAAAGGAGTATTCCAAAATACAAACCAAGTAATTAATACCAATTTCTTATAATCTATTTGTATATGAATGTAGTTTTTTATTTTAACCTTAGGCTATTTGACTGCACAGCCAACTGTTTTACAGTAGATATTTCTATGAATGTAGATAGTCTTGTTAATATGATTGAACTATGTTGGTGCATTCTTTGATTTTTCTTCTTAATCTTCTTCAGGTTATAGCAGTTAAGAAGCTTGATAGAAATGGATATCAAGGAAACAGAGAATTCTTAATTGAAGTATTAATGCTTAGCGTTTTAAACCACCCGAATCTAATAAAATTGCTTGGGTATTGTGCTGATGGCGGTGAAAGGATTTTGGTTTATGAGTACATGAAACATGGGTCCTTACAAGAGCATCTTTTTGGTATGCATTAATCACTATGAATTAATTTGCATAGTATCCCTTCCACTTTAATCATTTAATAAAATGGGATTCTAGTTATAAGGGCCAGCTGTTGGAAAACCTTATTTTATGGGCTTCACTTTTGTGTTGAGGGCCATGGTTGATGGAAAAAATTAATTTATTTGATTATGGAGTTTATCTGGTTTAAATATGATTTAGACTTGGGACCTTTATTTCCTAAGTGAACAATTGGAGGCCCTTAAAATTGCAGAGCTCATTGCTATATATACTAATATACCCCATTCTTTTACTCGCTAATTCTAATCAATCTACCAACATATTATAAATCAGTCAACAATCTTCTACCAACCAAAACGGTTAGTAGTGAGCTTGGGGTTTATTAAGCAAAAAGTGAGCATGTATCAACTATCAATGTTCTCTAAAACCATAATATGCATGCATGCATACACAAACACACACATGCACGCGTATACACACACGCATGGCAAAAATTTGTTACATCCTAATATATTTTAGAGTTACACGATGTTGAAATCAAATGAAACTTTTGGGATCTACAGTCTGCATTATGAACATCAAATCCACAAAAAGTGGGGTCATTTAAAAAGTTCTAGCATGTTCAGAATGTTAAATCATTGTCAACCATGAAAACATTTATTTTAACCAAATATTATCCAAATTATCCAGAATTTGGTGAAAATGATCTTGGGTCTCATAAGAACATATTTACAAGTTTTTTTGACCTCGAAATGTGTAGCTCTAAAATTAGAGAGTAGATGGGGGTGTAGGGAAGAGTGGTGTAGCAGAATTCGTGTGTGTGTAGAAACGGTAAAGAGCTCCCCTATTTTTAGCACCCTAGATACTCCTTGATATCAACCACATACACACAACAGAGAGATAGAGACGTGCACCCTTCATTGTAATTCCCATTCAATAATAAGTCATTCCTAACTATTTCTTCTTTTCAGATTTGCCACCAAACACTAAGCCATTAGATTGGAACACGAGAATTAAAATCGCAGCAGGGGCAGCAAGAGGACTCGAACACTTACACGATACAGCAGACCCACCTGTGATATACCGCGACCTCAAAGTATCAAACATACTGCTCGACGAAGATTACAACCCGATATTAGCTGATTTTGGGCTAGCAAAAATAGGCCCAACAGGCCCAAAGAACCACGTATCAACACGTATCATGGGAACCTTTGGTTACTGTGCTCCTGAATATGCATTGACAGGGAGATTGACTAAGATGTCCGATATTTATAGCTTCGGAGTTTTGCTTTTGGAGTTGATTACTGGTAGAAAAGCCATGGACTTGAGTAGGCCAAGGAAGGAGCAGAGACTTGTTGATTGGGTATGTCAAAAGTTCTCTACATTGTTTCAATAATAGAAAAACTTCAAATTTAAACCTCTTTTGGCCAAGTATTATCAAAAGTGATATATGTTTGTAGTAAGTTTTAAACCGGGTATATTTGGATAGTACTTGGCCAAGACAGGCATAAATCATGAAATTTTTCATTAATGGTATAAAATGTTTAGCAGTCTAAGACCATGTCCCAGTGGCAAGATGTTCATATTTAGGTTCTAGGTTCTGAGGTTACAAGTTCAAATATTACTTACTGTGATTCGAACCACGAACATTTTAGACTTATAGCACATATATACTATCTAAGACATGAACCAATAAGGTACCACCCTCTATTAAGTACAAGTTTCAAAAAAGTAAAATAAAGAAATGTTTAGTAAAATCTAATATGACATACGTTGAATTCGTATGAATTCTGTAGGCTGCCCCGAGATTTCAGGACAGGAAGAATTTCGTCGAGTTAGCGGATCCGGGTCTGGGAGGCAATTTTCCGGTAAGAGGGTTGTATCAGGCTTTGGCGGTGGCTGCCATGTGTCTGCAAGAAGAGGAGACTAATCGCCCTCTCATTAAAGATATCGTGTTTGCTCTTCAGTTTCTTACTATGCCCGAAAATAGTACAGCTGAGGTTAAGTGTGATGTAGACTCCAAAGAGGAGGGAAATGGTAGTAGAGATGTTAACGATGATTCCATGCATAGTTTTCATAGTTTCCCGGACGTTGATGTTGATGTAAGAGAATGTGATTGAGATGGAGAAGATTTGACTATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249933.1	2.1e-152	serine/threonine-protein kinase PBS1-like
Swissprot	F4JEQ2.1	3.9e-127	PBS1-like protein 23
trEMBL	A0A843WWS4	3.5e-141	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G20530.1	59.00	9e-131	464		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G05719	AT3G20530.1	361	145	3	146	504	3	362	59.00	9e-131	464
AfisC1G05719	AT5G13160.1	364	146	2	146	503	1	364	58.24	4e-125	445
AfisC1G05719	AT5G18610.2	362	140	2	148	503	4	361	58.56	8e-125	444

Ortholog group

Species	Genes
Allium cepa	g93213.t1
Allium fistulosum	AfisC1G05719
Allium sativum	Asa8G05621.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	228	493	149.7	8.8e-44

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0016021	C	integral component of membrane
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0046658	C	anchored component of plasma membrane
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0040007	P	growth
GO:0007166	P	cell surface receptor signaling pathway
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009941	C	chloroplast envelope
GO:0010183	P	pollen tube guidance
GO:0035420	P	MAPK cascade involved in innate immune response
GO:0046777	P	protein autophosphorylation
GO:0071323	P	cellular response to chitin
GO:0090404	C	pollen tube tip
GO:1900150	P	regulation of defense response to fungus
GO:1900426	P	positive regulation of defense response to bacterium
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13430	PBS1; serine/threonine-protein kinase PBS1	EC:2.7.11.1	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network