result

Gene information

Detail information of AfisC1G05813

Location

Gene	Chr	Start	End	Strand
AfisC1G05813	chr1	1066372349	1066377006	-

Sequences

CDS

Protein

Gene

>AfisC1G05813
ATGGCGAAAGATCAAAATAAGAAGGAGCCATGGACAAAACCAGAAGACATGCAACTGGTATGCTATGTAAAACTGTTCGAGGAACGATGTTGGGATTTCATAGCAAAAGTATCAGGTTTGAGGGGGTGGGCGGTAATGCCAACAAAGGCAATAATGTATATTAACTGACTATATACTAATATATGTTTATGGTCTTAACAGAACAGGAAAAAGTTGCAGATTAAGATGGGTCAATTATCTGCATCCTGGACTCAAACGTGGCCACATTACTCCTGAAGAAGAGCGCCTCATCATCGAACTCCATGCTCAATGGGGCAATAGGTAAAAACTTTCCATAATTAAATAATCATAATGTAAAGATAACAAAGAAAGAACACCTGCACAGATGGTTTTTGATTGCTCGGAAGCTGCCAGGTCGAACTGATAATGAAATCAAAAAATACTGGAGGACACATATGAGGAAACTAGCTCAAGAAAAGAAAATAAAAGATTCAACTTCATTTGATTCATCTGTTACTGAATTTCAAGTGTGTGCCAATGCAACGGAGCACCAAGAAGTATGGTCAACAAACGACTCAAGTTCTCAAACAAAAGGTAAATATGTTGAAACGTTGAAAAGTTATTCTATGGATCATATATGGAATGAGATATCTACGTTAGAAGATAAGTTACCTTCTCCTAAGTGGAAGTATTGTCCTAGTTCACTATGGAAGGTAAGCGCTGAAGAGCCAGAAATTTACAATTCTGTGTATGGCAGCTTATCAAACCCATAGTATACTCATTTTAGTTACTCTAGCAAGACGCAAAGTGCAGTTCAAAGATTATAAGGATGCATTCTTTGAACGGTACAAATATTACTTTGCTTAGCACGTATGGTATCATCGTATAACTTAATTTATTTGATATCGGCATAATTAGAAAAGCTATGAGGACCGTTCTTTATTTTAAACATATAATTAACAATCCTATTTCTACATAATTATACCATGTAGTCATTTTCAGATGGTAGAGGAAACTATACATAAAAGTGGATGTTATTGTGATCACTTTATTCGGCATGGTACGACAAATTATATCAATTAACAAGTGAAAGGACAACAATGAGCCACAAGTGTTTATAATAGCTATTAACATCAGTGATAAGGGGACACTAATATATATGTTCTTGAGCTTTTGCGCTTATATCTTTAATAAAGATATAACTCAGTGTTGCATCCTACATAAGCCACTAAGTGATGGTAGGTTCTTCTTCTTATATCTTGTTCCCAATGAAAAGTGGTAATACCTTTCAATATCCCTACATATCTGCTTGCTGATAAGCCTACATATTTTTTTCATAGGTTTATATAGAAAAACTACCATAACTCATGTTAGGTACGGAGTTGCATAAATACATCTCTAAAGTTGACGTATTGCGTATTATCTTATTGTATTCAGGTCTAGTGTTCATTATTTCTACATTGAATCTTGTAATACGGCTTACATCAAATAGGATACGGCTTACATCAAATTTCATTTCTTCTATTCATATTTATTTACAAAAAGCCAGATATTGATTTTGTATGTGACGAATGGTCCACTTGCTAAGCCACATACAGTCATGTAACTTTTCGCTTGTTAACCTACCGGACGAATATAAAAAAATAATAACATTCATTTTTATTCGGTTTATTTTGTAAACAAAATCTTTGTAAAAAAACATAGTAATAAACTGAAACTGCAGTTCTAAAACTTGAAATAACCTAATATGTAGCAAATTCACCAAATAATGGAACAAATAGTAGAATTAAATATTAAAAAAATAGGATTGACAAAAACAAAATTTTAATTCCGATTGACAAGATTTGTCAGGAACATCCTACCAAATGCATAAATATCGGTCTAACACCACCATTCAAAGGCAAAAGCATAAATATGGACTTTAAGTTAACTAATGTTGTCGAACACCACCATTCAAAGGCAAAAGCATAAATATCAGTCTGCTCAAAATAACAAAATGTTCATATAGTTAAATCTTATGCAAACACACCAAACAAGATAGAAAGAAACACAACACAATTCTAACATCATAAAATAAAAAACCTAAACCAAATAGATGCAAATATGAAAGAATTAACCTTGTCTCTGTCTGTTCCTCATCTTTGGGCCAGATTTAGCAACCATGAGAGCTCTGGTCACATAGCTCAGTCTAGCAAGTGCCAACACTTATTTGTCGCGCTAGGACATGGATCATCTCCAAAAATTGAAGCAGATAGCGGAACGTAGCACCTCGATCTACCCACACAAGCCTGTTCGGATGCACGTTCTTATAGAAATCATATATTTCTAAATCTACCGGAAGGACAGACTTTACCAAACGCACTTACCTTCTCAATAACCGACTTAGATTCAAAAGAATGGCAATTTCCAATGGAATAGCTTCCACAGTCACCAAGAGGGCTCTATAATAGAAAGTTGCGATTTGAGCAATCTACAATAGAAAGCTTCAATAAACCCAAATAAACGCAAATGAACAAGTCACCAGGGCGAAATCCAATACCTGAAGTCGAGATCCTGAATCGCCTGAAGCTATAACCGAAGTCGAGATACCTGAAGTCAAATTGCCAATTCGCCTGAAGTGATGGCAGATCCTGAAGTTGTTTTGCAGAGCGAAGGAAATCGCGTGGTTTTGTTTTTCTTTCTTTTTAAGCCGTAGGAAAAAAAGCGTGGAGAGGTCGAGAATTAGGGCTTCAACTGAAAACAGTCCACATTTACATTTTTGCCCCAACCAATTTAATTGAATTACACTTTAACCAGATTTTCCAACGCAAATATGTGTTGGCAATAAAAAAAATTATAAATATGTATTTTCGATCACAGATTTATAGCTTACCAACAGTTATTATCATGACCGATGTACAACACAAATAAGTGTTGGCAATTGAAAAAAATAAGTGTTGCAAAATGGCTGTTATGGTGTAGTGAGACATGTACAAATAAGCAGCATGAAAACACACCAGATCTCAAATGGCACAACGAAACAAATAAAAACAACATGTCCAGATCAATGAAGATTTCAAGTGGAAAAGACTTGGATCAGGCAACTCAACAAACACAACAAGGGCTGCGACCAGACCAGAGACAAATACAAGTGTACATGTGCAGGCAAAAGTAATGGCCAGTGCACAAGCAGCTCAGCACATACAAGTGCACATTAACAAAACAACATGCATCAGTTCAGAACCCAGACCAGAACTCGAAGCAACTAGCATAGTGGACAAGTGAGCACATGAAAACATCAATTTCAACATGAACCAGAGTGCATATATACAAGTTCAGTATTATCTATATGATGCAAGTGAACAAGTGCACTGAATAATCAAGTGACTGTAGTTTTACAAAGAGATGAAACAAGCAAAGTCAATCATACACATATATACATACATATATATATGTATGTATATACATGGAGATGACACACAACAGAGCAATAATATGACAGTGAAGCATCATGTATATACATATGCAACAGAGTGGACAGCAAGGCACCGAAGCAATCACACACATATATACGTACATGTATGTATATATGTATGGAGACCACAATTTAACTCGAAGCTAATCACAATACAGCAAATATGATGAAGAAGCTGTGGATCATGAACAAGAGCAAGATACAGAGCAAGGTACACAAGAAATGCACACGCATACAACAACAGAAGTAAAAATTTCACGAATTATCCGTAGCAGTTTTGAACAAAATCAGAAGTCATAAGAATCACGAATTGAACAAGTCAAGCTTCATAAAGAACAGATCATCTCAAAATTCAAAATGTCAAAGTCGTAGGAGAAAAAAGAACAGAACAACATTCAAATATATCAAAGATGAACAAGTCAGGAATCACACTTATCGTTCGATCAAAAATCCATGGCCGAGAAAAGCAATTGACAAGTTCAAATAGAAATATACAAACGAAAATACAGGTAATCAAATCCTATATAAACCCATGTCATCATCGGCATTAAAATCATTCGAGTTCAAGCAAATACCAGAGCAAGCCTTGAAATAAATCACGAACAAATTTATAACTCGAATCGAAGTCGAGCATAATCAAAATAAAAAGGGGCAAAATCACATACCAATTTCATACCAGTCGAGCTCGACACAATTGGAGCAGCCACAAGCTAACAAAGCCAAGGAAGTCAATTGACGAAGCCAATCAACGCAATAGCATACTTCAATCGATCAATATCACAAGCAGCGCCTCGATTTGAAAACCCTAATTTTTGAAGAGCAAAAGGAACGACCAAAGAAATAACTCAAACGAAAAATGGAGACAAGTCTTCACCGTTATAATTTTATTTATGCCAGTTGCTTATTTTATATTGGGCCTCAATTTTTAATAGGGTTTTGTTTTATAGTTTTATTTCATTTACAATTTTCATTCTTTTAAAATTTGAGTCAAACTCTAGTTGTGTAACTAGGTACGAACTACGGTTTTGTAGTTCGAGAATTCACAATTTAGTGGCTGAATTGTGGCAGGGTTTTGAGCTTAGAGTTAGGTTAATCAAGTTAGCGGGTATCGCGATTTTATGTGTTTTGTAAGTGTCTGATTACTTAATTTGTAGTAGAAACCTTTGGGGCAGCATGTAGGCAGGTTATTGCCAAAGCTGGGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241438.1	6.9e-57	myb-related protein MYBAS2-like isoform X2
Swissprot	Q4JL76.1	2.6e-53	Myb-related protein MYBAS2
trEMBL	A0A2I0X4M1	1.4e-56	Myb-related protein MYBAS2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G46130.1	47.81	2e-48	189	ATMYB48;ATMYB48-1;ATMYB48-2;ATMYB48-3;MYB48	myb domain protein 48

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G05813	AT3G46130.1	228	86	4	1	195	2	229	47.81	2e-48	189
AfisC1G05813	AT5G59780.3	216	84	3	1	195	3	212	48.61	4e-48	188
AfisC1G05813	AT3G27810.1	161	84	2	2	161	16	173	45.34	7e-36	147

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	8	55	42.7	4e-11
PF00249.28	Myb_DNA-binding	Domain	61	105	53.4	1.9e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009651	P	response to salt stress
GO:0009686	P	gibberellin biosynthetic process
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0030154	P	cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0080086	P	stamen filament development
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network