result

Gene information

Detail information of AfisC1G05909

Location

Gene	Chr	Start	End	Strand
AfisC1G05909	chr1	1085957657	1085962230	+

Sequences

CDS

Protein

Gene

>AfisC1G05909
ATGGATGATACCTTAAGCGAAGATGATGCTCTAATTAGAGATGCCAACATGGATCTTAATGATTTTAATGCCATAGGAGTTGAGCTACTCAACTTAGGAAATACAAGCATAAACGAACCAGTTATTGGCATGGAGTTCGACTCTGATGAGGCTGCTAAAGAGTACTACATAGCTTATGCTGCACGTGTAGGCTTCGGTGTACGTATGAACAAGTCCCGTAGATCCCGAAAGGATGATACGGTAATTATGCGTAGGTTTGTATGCACGCGTGAAGGATTCCACTCAAAAAGAGTAATCTACGATGACGGTAAAAAGAAAAGAAAGCGTGGGACCTCTAGGGAAGGTTGTATGGCCATGATCGAAGTGATCCGTAAAGATCATGGGAAATGGACAGTCACAAAGCTTGTCACAGAACATACACATATGGTTGCTTTGGCCGATCAGTTTCAAAAACCACAGACCGATAGACCTATATTTCATCACGGTGAGTCGAGTGAAGGGTTCGGTACTTTGAAAATTTATAATAGAGGGATAAGAAGCAATCCATTTGGAGAAGGGGGAGAGGCTCAAAGTCTTTTGGAATATCTTAAGAAAATGCAAGCGGAGAATCCTGCATTCTTTTATGCTATTCAAGTTGACAACAATAATTGTATGACAAATGTTTTCTGGGCAGATGCTAGAGCAAGAACAGCCTACCAAAGTTTTGGTGATTCTGTAATATTTGACACGACTTATAAAAAGACAAAATACATGATGCCTTTTGCAACTTTCAGAGGTGTAACTAATCATTTGCAGTCAGTCACATTTGGCTGTGCTTTATTGATGGATGGAACCAAGGGTTCGTACATTTGGCTCTTTGAGACATGGATGTCTGCGATGGGGGCTCGCCATCCTATTTCTTTGATCACCGACAGAGATAAGTATATGGAAGGAGCAATTCAGAAAGTCTTTCCTACTACTCGTCATTTGTTTTGTAAGTGGCATATATCGAGTAGGTCAAAGCAAAAGCTGGCAGACGTGTATTATAAGCATAATACATTGAAAATGGAACTTAAAAAATGCATATGTTTTTCGGAGACGATAGAAGATTTTGAGAGTCAATGGGAGAATATGCTTGAGAAGTATAATCTTTGGGATAACAACTGGCTACGTTTATTGTATGATATACGGCTAAGATGGGCCACAGTGTATCACAAGGATATTCTTTTCCCTGAACTATTAGTGTCTCACAGGTTAGAGAGTTTGAATAAGTTTTTTAAGAGAAATTTTAATGCAAAAACATCTTTGCTTGCTTTTATTGAAAGATTCGACCAAGCCATGACGTCTCAATATGAGAAGGAAGCTTGTGCTGATTATCATTCTACGATGTACACAAAGCCCCTTTTGAAAACACCATCTCCTATTGAAAAACAAGCTGCCACTCTTTACACGAATGCCGTGTTTGAGAAATTTCAAGAAGAGTTTGTTGAGTCTTTAGGCTATTGTGTAGACAAGCTTGAAGATGGACTTGTTAGCAAGTATAATGTAGTTAGAGATGAGGATAATGGTAAAAGCTACACGGTCATATATGACGAGTGTAGCAAAAAAGCAAACTGTAGCTGCTGCAAATTTGAGTACTCAGGCATTTTATGTAGGCATATTTTGCGGGTGTTTTTTACCGTTGGCATCCGTAGTCTCTTGGAAGCTTACATACTGAAAAGATGGACTAAGAGTACTAAAAGTGTAGCTTTGACTGAAATGGCAGTTGCTGATTCTGCAGTTAGTTCTCAAGAGAATAATCTTGTTGTTTTTTATAATGATCTTTGCAATGATGCCGTTAGATTTGGAATGGATGGATGTATTTCTACAAAGGTGTATAATGTTGCAAAAGTTGCAATTCAGAAAGCTTTGGCAGAAGTTGTTTCTGCAAAAAATATGCAAAGGAAGGAGCAACCGAGTTTTCAGAGATGTGCAAGGCTGCAAAAGATGCAGCAGCACAAAGTGCCATTGCCAAAATTGCAACCAAAGAAAATTTCTGTAAGAGTAAATGATGATGCTGGTAAGAAAATAATAAATGATGAAATGGATATACTATAAAGAGGACAGTGAATCTGCATCAATAATGTATAGAGTTCTGTGTCCTTGCATGTTTCTGATGTGGTAAAAACCCAGCACGTATCCCAGCAGGAATGTTTTGGTCTTCTATCGGTAATAACAGTCTGAAATCCCTTTGTTGTTTATTGATACAGGTTCATTTTTGATTTTTCTGTATTGTAAAACACATATATCTAGGGTGATACTATTCGCATCCATCTAAACTTTTTCTCTCATCCATTTATGCTCTCACCCAATCAAATACTTCATTCATTCAGCCACGCTCACATTTTCTTATTTTTTTTCATTTCTGATAACCATAACCCAACTTCTCTCTCTCTTCAAACAATAGAACAAAGTTTCTCCGTCTAAATTCTCTATAATCAATCTTTTTTTTCCGTCAAAAGCTTCACTATTACACATGAATCCGACTAATTTAGTTGTGATTGAGATGCTATCAACTTTAATTGTTCGTGGATTTTCCTTTTTCTTGTAAATTGTGTTATCAACTAAACCTAACATAGTAAAGAATAATTTCCATCTCAAATCCGTTGTTATGGTAAAACATAGTAAAAAACTACATTACTATTTCAATAAAAAATATCCGGTCGATATTGCTTTTGTTCTTTTAATAAGAAAAGGAAAAAGAAAAGGAATGATGAAACTAATTGTAAAAGAAACCAATATGACATAGTCAAATATATTTAATTACCATTATGCTTCCGTAGAACACCAACGGGATCACAAAACTATTGATTTAGCTGCATATTCTAAATATAAATAATTATCTTAACCCATCAATTCCTAATGTGAAATTGATAAAATATTTATATTTCAGTTGTTAATTTCATTTTCATCTGTCACTAGTGGTTGAGAGGATTGAAAGTAATTATGTTTGAGGTTTAGATTTTATTTTATTTTTACGTTGTTCGATTATGCATAATCAATCATGTTTACTTCTGGATCTTCTCTTAAGTTTTAGGTAGGTTTTTGAAGTAATTTCTATGGCTTAATAGATGTTTAAGTAGCGTTAGTAAGTATTTAGGTGTGTAAATAAGATTAAGTTTTACCCCTTTAACTTTCTCTTGCTCATTAGAAACCCTCACCTACTTGGAAACCACACTGTTCTGCTCCTCAATTGTTTTCCTACTGCACGGACCTCAAATTATGCATTTTACCTCCATCTTTTGGCTCCCTGAAATATTTATGTGCTGGAAAAATTACTTTTAAATTTTGTTCAACAGATGTAATTAATTAGAGATGGTTTCCAACTATGAAATCTGAGTAATATAAGCCAAAAAGGTTTCTGCATATATTTTTTCTAAAAAATAGTTTTGAGTTTTTGCTCCAAAATGGTTGCATTTTCACTGGATTACCTTTTTTGCAGAGATGTAAAAGACATGATTCTCATGGAAAAATCTCTTACTCATGCAGGTATGGTTACAATTTTGTTGACATGGCTTTTTTAATGTTATTTTAACACTAGCATTTAATTGGCGAAACAATAGCATCTATGAATATACATGTCGTTAGATTGGTTTTAATAATTTATAATAGGTTATGGTAATCCTAATGAAATTGTGTCAACAAAATTACACACATAAGTATGGCGCATTAAAGTTTTTCTTTCAACTAGGAATAAAATATGTGCACAATGCTGCAAAAGCTTAGTGGTGATCCTAATGAAATTGTGTCAACAAAATTACACACATAAATATGGTGCATTAAAGTTTTTCTTTCAACTAGGAATAAAATATGTGCACAATGCTGCAAAAGCTTAGTCATTTTATGTTTTTTGAGTTGGAGCCTTGGAGGTGATATAGCTTATACATTTTCATGATTCTTGTAATTTTAGGGCAACAAGCACTTGAATTCTAGTGTCGATTATGGCACACTTGTTTAACGAGTGCCCAAAAGGTGGTCATTTGTTGAACAAGCAACAAGTGCCTAAAAGGTGGTCATTTGTTGAACAAGCAACCTGACTTGGTATCTGTATATAGATGCATAAGAAGAGCCCTCTAATTTCATCTTTTATTTTACGATTATAACACAGAAATCGATGAAGTGTTGCCATGAGCTAATACAAATGGAAGATACAAGTTCATGTTCATAATGATAGCGAGGTTAATCCAGCAGATTCACCATCAGATGTTGTGGCCATAGATGATCTTTGTGTTTTGTACAGATGGATATACTTACATGATTCATTTACCTTTAGTATTGTCTAAAGTATAATTTTTTATTATATTTTTATAGTTAGACACAGAAATAACACTTTAGATCAATTAAATGAATGATGATCGTCAAACATCGTGTTTTATATAGCTGGGCAACATGTAGATACATGGTAGGTTGTTTATGTACCCATTAAACTTATATTTTATACTGCTCGAGACCTCTAGAGATAAGTTACAAGCATCCCTATTTGCCAACTTTCGTCAGATTAGACCTTATCAGCATTGTAATCGTTGCTTAGTAGGACCAATATAATCGTTGTTTTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020258746.1	5.3e-286	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8.1	6.8e-129	Protein FAR1-RELATED SEQUENCE 5
trEMBL	A0A6I9QEB9	1.4e-283	Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38180.1	40.06	6e-130	461	FRS5	FAR1-related sequence 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G05909	AT4G38180.1	634	339	9	39	638	72	698	40.06	6e-130	461
AfisC1G05909	AT2G27110.2	648	351	12	16	645	33	648	38.12	5e-126	448
AfisC1G05909	AT2G27110.1	648	351	12	16	645	33	648	38.12	5e-126	448

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03101.12	FAR1	Domain	54	143	82.1	3.3e-23
PF10551.6	MULE	Domain	239	331	98.6	2e-28
PF04434.14	SWIM	Domain	529	553	31.9	6.6e-08

Gene Ontology

Accession	Ontology	Name
GO:0005488	F	binding
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0010017	P	red or far-red light signaling pathway
GO:0010218	P	response to far red light
GO:0016620	F	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0044710	P	single-organism metabolic process
GO:0044763	P	single-organism cellular process
GO:0048518	P	positive regulation of biological process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K17604	ZSWIM3; zinc finger SWIM domain-containing protein 3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network