result

Gene information

Detail information of AfisC1G05967

Location

Gene	Chr	Start	End	Strand
AfisC1G05967	chr1	1092169592	1092170922	-

Sequences

CDS

Protein

Gene

>AfisC1G05967
AAACAATCAAAATCAGACCGATGCATCAGAAAACGTGAGATCGGGTATACTAGTTGGAAACAGGATAAGAGAGAACCATATATGGCCTCTTGTCAGAGGGCCATGAGGAATCTCGTGAATCTGACCGGTTACAATTTAGGCTCTATGATGGAACAACATTTAGCTGCAGTTATGAACAAGATAGGTGCAAATGATGCGAATCGTAGTCAAGTGTTCCAACAATCGCTGATAGGTACTTATATAAATATTCTGTTGTAGCTAATGTTGTATTATATAAATCCACGTACAGTACTTCCGTTCAAACAAAAACAGAAAATCTAGCACTACCGAAAAAGAAAGTAAAGGAAACTAAATAATGTTGTCTCAATCAGCAAAAGGTTATTTGATTGAAGTGATTACGAGAGGAAAAGAGCTAATGAATCATCTTAATACACTTCTTAACCCAGATGCCGATAAACCTTGCGATTTATCTAGTAAAATACTTGAATCCCTTTCAACTGCTCTTGACCTTCTTGATCCAAAAGAAGCAACTAGCCTTGATGTAGTGGCCACTGCTAATCAAAGCATTGCTTCCAACTTTAGTTTGAAGAGAAACAATCAAAGCACAGATAGCCCCTCACTTAGGAGACGGTACATATACAAGTGTTTTGCACAGCTGTGTTTTCTTTTTGTGGAAAATACAATTTTGATGCATCTCCTAAGTGAACAATATTTCTTATACATGCTATAAATATTTTTTTTACATAACAAACAGGAAAGTTGGAGATTCAAAGATGACATACATGACATCAGCGCCACATTGTGATGGTTATCAGTGGAGAAAATATGGACAGAAGCCCATTTCTAGTTCTTCTCATCCAAGGTAAGCATTTATTATCTTCTAAATTTATCCATTAAGCTTTCAGTTCGATGTAGCATAAGAGAAGGAAGTTAGTGTAGTAGTACCACATATTATATTTAAGGTTTAATTCACACCAAATTTGAATAGTAATTTGCATGTTTTGTATATATCCTTGAATATGGAGATTAATATATTATTTTTACAACTGTACTAATGTATATAAATCAAATTGTATGTTTACAGGACATATTACAGATGCACGTATAAAGATGATTGTGGATGTCCGGCAACAAAAAAGATTCAGCAACAATGCAATGAGATGTACAGCCACTCTCCAATGTTTCAAGTCATTTACGAACATGAACACTCTTGCAATTCAACCATCGCTAATTCAGAAAATGGGTTTTATCATGATCAATCAAGTTCGGCAACAACAGGTTCGAATGCTTCAATAAACCCAACAAACGAAAATGGAAAGAGAAGAACCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_017697073.1	2.4e-18	probable WRKY transcription factor 70
Swissprot	Q93WU7.2	2.9e-08	WRKY DNA-binding protein 58
trEMBL	A0A8B7MT22	1.7e-18	WRKY DNA-binding transcription factor 70-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66550.1	31.25	2e-13	73.2	ATWRKY67;WRKY67	WRKY DNA-binding protein 67

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G05967	AT1G66550.1	192	100	9	56	236	10	180	31.25	2e-13	73.2
AfisC1G05967	AT2G40750.1	162	85	6	75	218	59	213	32.10	3e-13	72.4
AfisC1G05967	AT3G56400.1	172	104	3	59	218	15	181	29.65	3e-13	72.0

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	154	216	77.1	9e-22

Gene Ontology

Accession	Ontology	Name
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0005516	F	calmodulin binding
GO:0005634	C	nucleus
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:1901141	P	regulation of lignin biosynthetic process
GO:1904369	P	positive regulation of sclerenchyma cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network