result

Gene information

Detail information of AfisC1G06082

Location

Gene	Chr	Start	End	Strand
AfisC1G06082	chr1	1107608411	1107610906	+

Sequences

CDS

>AfisC1G06082
ATGAACTTATGGTCAGACGACAACGCTTCGATGATGGAAGCATTCATGGCGTCAACCTCCTCCCCCTTTCCCTTCTCCGCCCCCTCTCCACTACCCGCCACAGCCGCCATCGCCTCCGACTTCAACCAGGAGTCCCTCCAGCACCGCCTCCAAACCCTAATCGACACTTCCCGCGAGAGCTGGACCTACGCCATCTTCTGGCAGTCCTCCTTCGACCTCCACTCCGCCTCACCCCTCCTCGCCTGGGGCGACGGCTACTACAAAGGCTGCTCCGAAGAATCCGCCCCCAAATCAAAACGCTCGGATCACTCCGCCTCCGATCAAGAAAACCGTAAGCGGATCTTGCGAGAGCTCAACTCCTTGATCTCCGGCGGCGGATCCGCCGGCGAAGATGCAGTCGATGAAGACGTTACCGACACCGAGTGGTTCTTTTTGGTCTCCATGACTCAGAGCTTTGTTTCCGGATCCGGAATCGCCGGCCAGGCGCTGATGTCCGGATTACCTCAGTGGATTGACGGTCCCGATCGGCTCGCGAGTTCATCCTGCGAACGCGCGAAGCAGGCGATGCAGTTGGGGATGCAGACCATGGTTTGTGTACCAGTTGGGAGTGGTGTTCTTGAGCTCGGATCTGTTGATTTGATTTTCCAGAGCTTGGAGATTTTGAATCGGATTAAAAGTTTGTTCAATTTCGATCCTAGTTCTGGTGCTGCTGCTGCTGGTAGTAATTGGTTGATTCAACCAACTCCTCCTCCTGTTGCTGCAGCTGCACCTCCAGTGCAAATTCAGGCAGATCAGGATGAAACGGATCCATCTGTTTGGATTTCGGATCCAAATATGATGGACATCAAGGATCCAATACCTGAGTTATCCATTACTAAACAAGCAGCCCCTTTCGAGAACGGAAGCATGAGTTTCTACAGCAGCAAAGAGTTGAATTTCTCAGACTTTGCTCAGAGGAGCACACCAGTGTTCAAACCAGAATCCGGCGAAATTCTAAACTTCGGCGAGAGCAAACGGAGTTTGACGAACTCCATTCCAGGTGTGAATATATTTCCCCATCATCATAATCACCATAATCAGAACAATCAAATAAACAAAAGAATGTCGATTCCTGCAACATCAAGAAGCAGCAATAACGACGAAGGAATGCTATCCTTTTCATCTGCAGCGCCACATCCTTCCTCCATCGATCAAGGGAAGCCTAATGTTGGAATTCTCAACAACAGATCGAATTCAGATCATTCAGACTTCGAAGCCTCAATTAGAGAAGTTGAAAGCAGTAGAGTGATAGAACCCGAACCCGAAAAGAAACCAAAAAAGAGAGGAAGAAAACCGGCAAACGGAAGAGAAGAACCCCTAAACCACGTAGAAGCGGAAAGACAACGGCGAGAGAAACTGAACCAGAAGTTCTATGCACTCCGTGCTGTAGTACCAAACGTTTCTAAAATGGATAAAGCTTCATTACTAGGAGATGCTATTTCATACATTAACGAGCTTAGACTGAAGCTTCAAGATACAGAGAGCGAGAAGGAGATGTTACAATCTCGAATAGAATCAATTAGCAAAGATGCACGGTCAAACGGTGAGCATAAGCTGATGAACGGAAACAGTGCAAAGTGTGTAGGGGTGGAGATAGAAGTGAGAATACTGGGAATGGAGGCGATGATCAGAGTGCAGTGTATGAAGAAGAATCATCCGGCAGCGAGGTTAATGGGGGCATTGAAGGAGCTTGATTTGGAGGTGTGTTATGCAAGCGTTTCGGCGGTGAAGGAGATGGTGATGCAGCAGGCAACGGTGAAGATGGGGAGTAGGGTTTACACGCAGGAGCAGCTGACGGCTGCACTGTATTCGCTTGTAGCGGAGAAGACGGACTTTTAG

Protein

Gene

>AfisC1G06082
TCTTTTTCCATCCCCAAACCTTCTCCTTCTACCTCATTTCCTCACTTCTCTTTCACCTCAAATAAGTCTCTCTCTCAAAAACGCTAAAATCATGAACTTATGGTCAGACGACAACGCTTCGATGATGGAAGCATTCATGGCGTCAACCTCCTCCCCCTTTCCCTTCTCCGCCCCCTCTCCACTACCCGCCACAGCCGCCATCGCCTCCGACTTCAACCAGGAGTCCCTCCAGCACCGCCTCCAAACCCTAATCGACACTTCCCGCGAGAGCTGGACCTACGCCATCTTCTGGCAGTCCTCCTTCGACCTCCACTCCGCCTCACCCCTCCTCGCCTGGGGCGACGGCTACTACAAAGGCTGCTCCGAAGAATCCGCCCCCAAATCAAAACGCTCGGATCACTCCGCCTCCGATCAAGAAAACCGTAAGCGGATCTTGCGAGAGCTCAACTCCTTGATCTCCGGCGGCGGATCCGCCGGCGAAGATGCAGTCGATGAAGACGTTACCGACACCGAGTGGTTCTTTTTGGTCTCCATGACTCAGAGCTTTGTTTCCGGATCCGGAATCGCCGGCCAGGCGCTGATGTCCGGATTACCTCAGTGGATTGACGGTCCCGATCGGCTCGCGAGTTCATCCTGCGAACGCGCGAAGCAGGCGATGCAGTTGGGGATGCAGACCATGGTTTGTGTACCAGTTGGGAGTGGTGTTCTTGAGCTCGGATCTGTTGATTTGATTTTCCAGAGCTTGGAGATTTTGAATCGGATTAAAAGTTTGTTCAATTTCGATCCTAGTTCTGGTGCTGCTGCTGCTGGTAGTAATTGGTTGATTCAACCAACTCCTCCTCCTGTTGCTGCAGCTGCACCTCCAGTGCAAATTCAGGCAGATCAGGATGAAACGGATCCATCTGTTTGGATTTCGGATCCAAATATGATGGACATCAAGGATCCAATACCTGAGTTATCCATTACTAAACAAGCAGCCCCTTTCGAGAACGGAAGCATGAGTTTCTACAGCAGCAAAGAGTTGAATTTCTCAGACTTTGCTCAGAGGAGCACACCAGTGTTCAAACCAGAATCCGGCGAAATTCTAAACTTCGGCGAGAGCAAACGGAGTTTGACGAACTCCATTCCAGGTGTGAATATATTTCCCCATCATCATAATCACCATAATCAGAACAATCAAATAAACAAAAGAATGTCGATTCCTGCAACATCAAGAAGCAGCAATAACGACGAAGGAATGCTATCCTTTTCATCTGCAGCGCCACATCCTTCCTCCATCGATCAAGGGAAGCCTAATGTTGGAATTCTCAACAACAGATCGAATTCAGATCATTCAGACTTCGAAGCCTCAATTAGAGAAGTTGAAAGCAGTAGAGTGATAGAACCCGAACCCGAAAAGAAACCAAAAAAGAGAGGAAGAAAACCGGCAAACGGAAGAGAAGAACCCCTAAACCACGTAGAAGCGGAAAGACAACGGCGAGAGAAACTGAACCAGAAGTTCTATGCACTCCGTGCTGTAGTACCAAACGTTTCTAAAATGGATAAAGCTTCATTACTAGGAGATGCTATTTCATACATTAACGAGCTTAGACTGAAGCTTCAAGATACAGAGAGCGAGAAGGAGATGTTACAATCTCGAATAGAATCAATTAGCAAAGATGCACGGTCAAACGGTGAGCATAAGCTGATGAACGGAAACAGTGCAAAGTGTGTAGGGGTGGAGATAGAAGTGAGAATACTGGGAATGGAGGCGATGATCAGAGTGCAGTGTATGAAGAAGAATCATCCGGCAGCGAGGTTAATGGGGGCATTGAAGGAGCTTGATTTGGAGGTGTGTTATGCAAGCGTTTCGGCGGTGAAGGAGATGGTGATGCAGCAGGCAACGGTGAAGATGGGGAGTAGGGTTTACACGCAGGAGCAGCTGACGGCTGCACTGTATTCGCTTGTAGCGGAGAAGACGGACTTTTAGATATGTATTAATAAGGTGAATTTATATATCTGTATGTATTTATGGGTTGTTCGATTTACGTCTTGGAGATAATAGCAATAGGTTATTGTGCGATCATCGTCAGTCGTTCATCGGAGTCGGTGACTGTGGAGCTTTGCGTCGTATGAATTGTATATGGACGTGATTTGAGCAACCATGGTTGGACTGTAAAGGCCAGCAGTGTTGTCGTTTAGGTTAAACGAGTTTAATATTATAATATAATTATATGTGTTTTATTTCTCGTTCAACATGTTTAAGGGGAATGGATATGATCAACTGCCAGCCGTCATTTCAATAAGAAACGTTTTGGAATTTGATACCACTTGTAATAAGATATTTTCAAGCATCACGCTTTGAACAAAGTGTGAAATCGAATTTTGTAGTAATCGGACTCATCTGATGAAAAGAGGGCAACTGAATTGACAATTTAAATTACAAAATTGGTGTAATATTGTAATAAAAAATGTTCTACCTTGTTTGAATAAAAGGCCGATTTTTTCTGTTCTAAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008796257.1	2.0e-167	transcription factor MYC2
Swissprot	Q336P5.1	4.1e-141	Basic helix-loop-helix protein 9
trEMBL	A0A8B7CCN2	6.5e-168	transcription factor MYC2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G32640.1	46.82	5e-150	528	ATMYC2;JAI1;JIN1;MYC2;RD22BP1;ZBF1	Basic helix-loop-helix (bHLH) DNA-binding family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06082	AT1G32640.1	677	240	17	1	620	10	623	46.82	5e-150	528
AfisC1G06082	AT4G17880.1	635	249	17	2	621	22	587	47.56	3e-143	505
AfisC1G06082	AT5G46760.1	636	281	15	3	621	11	590	44.34	9e-131	464

Ortholog group

Species	Genes
Allium cepa	g348978.t1
Allium fistulosum	AfisC1G06082
Allium sativum	Asa7G03407.1; Asa7G03408.1
Arabidopsis thaliana	AT1G32640.1; AT4G00870.1; AT4G16430.1; AT4G17880.1; AT5G46760.1
Oryza sativa	LOC_Os08g43070.1; LOC_Os09g34330.1; LOC_Os10g42430.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF14215.3	bHLH-MYC_N	Family	46	228	181.8	1.2e-53
PF00010.23	HLH	Domain	454	499	39.5	3.5e-10

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0006952	P	defense response
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0009651	P	response to salt stress
GO:0009718	P	anthocyanin-containing compound biosynthetic process
GO:0009753	P	response to jasmonic acid
GO:0010629	P	negative regulation of gene expression
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043425	F	bHLH transcription factor binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13422	MYC2; transcription factor MYC2	EC:-	MAPK signaling pathway - plant	ko04016
K13422	MYC2; transcription factor MYC2	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network