Detail information of AfisC1G06166


Location
GeneChrStartEndStrand
AfisC1G06166chr111210800311121090762-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010935616.18.6e-64E3 ubiquitin-protein ligase HAKAI homolog
SwissprotQ9LFC0.15.4e-47RING-type E3 ubiquitin transferase HAKAI
trEMBLA0A6I9S0M26.2e-64RING-type E3 ubiquitin transferase

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G01160.158.152e-56 216RING/U-box superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag381224.t1; g381226.t1; g381227.t1
Allium fistulosumAfisC1G06166
Allium sativumAsa1G04461.1; Asa1G04467.1; Asa7G03357.1; Asa7G03358.1
Arabidopsis thalianaAT5G01160.1
Oryza sativaLOC_Os10g35190.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
-------

Gene Ontology
AccessionOntologyName
GO:0005634Cnucleus

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K15685CBLL1; E3 ubiquitin-protein ligase HakaiEC:2.3.2.27 --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.