result

Gene information

Detail information of AfisC1G06187

Location

Gene	Chr	Start	End	Strand
AfisC1G06187	chr1	1123857228	1123858452	+

Sequences

CDS

Protein

Gene

>AfisC1G06187
TCATATATAAAATCCATGGACTTTGTTTAAATCCACATAAGTATACACAGTTCCAGCTATAGTTTTCATCGTCTAATATCAAAATATTGTATACATAAAAAATGGTTCGACCACCATGCTGCGATAAAATGGAAGTGAAGAAGGGGCCATGGACTCCCGAAGAAGACATTATTTTGGTTACTTATGTTCAAGAACACGGCCCTGGAAATTGGAGGGCTGTTCCTGCTAATACTGGTAATTTTAATCTTACACACATACACACACATATCTTACTGTTAATTACATTTGCATCTATACTTGTCATACATTATATGTAAATATTGTAAGTTTGATCATGTTGTTAATTTTGGGAATTTGAGCAGGGTTAATGAGATGTAGCAAGAGTTGTAGACTGAGATGGACAAACTATTTAAGACCAGGAATCAAGCGTGGAGATTTTACCGACCAAGAAGAGAAGCTTATTATCCATCTTCAAGCTCTTTTGGGCAATAGGTAAACTTTTGGTTTGGTTTCTTCCAATGCCTTATGTGTGATGTATCTTAAGTGTAATAACTATAAAAGCTACTGATGTAAGTTATATGACGATGAACTCAGATGGGCAGCAATCGCTTCGTACCTTCCAGAAAGAACAGACAACGACGTGAAGAACTACTGGAACACACATCTGAAGCGAAAGCTTCAAAAACAAAGCAATGTTAACAATGGCAGCAGTAGCAGTACAGTGTGTAAAGGGCAATGGGAGAGGAGATTGCAGACCGATATTGGTACAGCAAAGCAAGCTCTCCTGGAAGCTTTGTCCATAAATAACACGGACTCGAAACTGCCTACAGGTTGTACTTATGCTTCGAGTACTGAGAACATTTCAAGACTTCTGGAAGGATGGATGAAAAGCACAAGCAGTCCCGATCAGTGTAGTGAGAACACTAATCAAAGCGTGGATGTATGTGAAAGTAGTGGGAGCAGGCAATCTATTGGTGCACAGGTGCCTATTTCAATGCTTGAGAGTTGGTTGCTTGACGATAGTTTTGAAGGAGATGCTTTTGGTTTGGGAATGGATAATAATACTGTTTTGATTTGAATTAAGGTTTGTTTTAGTTCACCTTAATTTTGTGGAGGATTTTGTTGCATGTTAAATAGACGTGTAAATTATCAAGGCTGGGCTGAAAGCATTATAATGTGTAAGTAAACATGATTAAAGGAATATCAATGTTCTGGCTAACTTCTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020276399.1	1.8e-87	myb-related protein 306-like
Swissprot	P81392.1	2.1e-80	Myb-related protein 306
trEMBL	A0A5P1EH71	1.3e-87	Myb-related protein 306-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G74650.1	62.84	3e-76	281	ATMYB31;ATY13;MYB31	myb domain protein 31

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06187	AT1G74650.1	218	47	3	1	184	1	218	62.84	3e-76	281
AfisC1G06187	AT3G47600.1	238	44	4	1	188	1	238	60.50	6e-76	280
AfisC1G06187	AT3G28910.1	327	81	8	1	248	1	323	49.85	5e-75	277

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	60.4	1.2e-16
PF00249.28	Myb_DNA-binding	Domain	67	112	55.0	6e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0001666	P	response to hypoxia
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009414	P	response to water deprivation
GO:0009416	P	response to light stimulus
GO:0009611	P	response to wounding
GO:0009626	P	plant-type hypersensitive response
GO:0009651	P	response to salt stress
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009866	P	induced systemic resistance, ethylene mediated signaling pathway
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0042761	P	very long-chain fatty acid biosynthetic process
GO:0043565	F	sequence-specific DNA binding
GO:0071281	P	cellular response to iron ion
GO:0071732	P	cellular response to nitric oxide
GO:0080091	P	regulation of raffinose metabolic process
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network