result

Gene information

Detail information of AfisC1G06228

Location

Gene	Chr	Start	End	Strand
AfisC1G06228	chr1	1131338471	1131339592	+

Sequences

CDS

Protein

Gene

>AfisC1G06228
TCACACATACGGACGAAAAAAAGGAAACTTACAGCCGCAATTTCTCATTATACATTGAAACATTACCACTCATTGTGGTATACAAAGCTCAAGTAGAAATAAAGATGGTTGATAGCGAAGAAGACAATGGAAGCAATAAGTATATTGATAAGAAGAGGAGGTTTAGTGAAAAGCAGGTTAAGTCGATGGAACTTATGTTTGAGAATCAAACGAAACTCGAACCAAGAAAGAAGTTGGAGTTGGCAAATGAGTTGGGTTTGAATCCAAGACAGGTTTCGATTTGGTTTCAGAACAAGAGAGCAAGATGGAAATCTAAACAGCTTGAGAAAGAATACGGTACTTTGAAGGAAGACTATGAAGCACTGCTTTCAAAGTGTGAATCAGTCAAAAATGAAAAACAAATTCTCACTAAACAGGTATGTGCTTAAGTGTCACAAGTACAAATCATTTTGATGCATATTTTTAAATGTTATGTTTCTACAAATTTGACACAATAATTGACCAAATTTAAACTGAAGAAAGAAAAAAATATTAGTAAGCAAGTTCATGGGGTGTATAAATTTTTCTTAATGCAGTTGAAGAAGTTGGTAGAACTGATGGATACAAAGTTGATGAAGGGAAAAGGCGAAGAGAGGCAGAACTTAGAGATGACACTGAATGACTATGCGAAGGAAGACAACTTATTTAATAAATCATATATGGTTGAAAATGGTTACGAGCAGGAGTTCGGTTTCCATCAACTAAATTGGCCTTCGAGTCAATTAGGGGAAAACTCACAATGGTGGGAATTTTCACCTCCAAATCAATAATGGAGATAATCTATTAAGCAAAATAGAATATGCAAGAGATGTATTACAAGTAGATAGTAATATTGTCTAATTACTCCTTTTCTGAGTATTAATTCTCTGAGTAAACATACTGCAACGATGTTAAACACATGACAACCAGAAAATTGGAGGTTGAGTATATCATTTTGACCCTTCCCCATGACAACGAGAAACTTGGAGGTTGAGTATATCACTTTGAGTTTCCCCATCTCATTGAAAATGGAGTGTGCTAAATGCACCGCATTTCATACCCCATTTTATTTAAAAATTCATTACGTCATCGAGTGGTTGTGAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010933776.1	1.1e-30	homeobox-leucine zipper protein ATHB-12
Swissprot	Q01IK0.2	7.2e-22	Homeodomain transcription factor HOX22
trEMBL	A0A6I9RWN1	8.3e-31	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G46680.1	57.76	4e-31	130	ATHB-7;ATHB7;HB-7	homeobox 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06228	AT2G46680.1	116	46	1	10	125	26	138	57.76	4e-31	130
AfisC1G06228	AT2G46680.2	116	46	1	10	125	26	136	56.03	3e-29	124
AfisC1G06228	AT3G61890.1	94	34	0	19	112	33	126	63.83	8e-29	123

Ortholog group

Species	Genes
Allium cepa	g220811.t1; g318670.t1
Allium fistulosum	AfisC1G06228
Allium sativum	Asa7G03304.1
Arabidopsis thaliana	AT2G46680.1; AT2G46680.2; AT3G61890.1
Oryza sativa	LOC_Os02g43330.1; LOC_Os04g45810.1; LOC_Os09g35910.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	16	69	57.8	6.2e-16
PF02183.15	HALZ	Family	71	112	45.1	7.5e-12

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0009615	P	response to virus
GO:0005634	C	nucleus
GO:0007275	P	multicellular organism development
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009651	P	response to salt stress
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network